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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:768395 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01128621_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 17 - Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AF180951.1 AAF01409.1
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain PRR25 MIR662 CHTF18 MSLN RPUSD1 GNG13
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain PRR25 MIR662 CHTF18 MSLN RPUSD1 GNG13
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TSR3 TSC2 HBA2 IGFALS TBC1D24 DECR2 STUB1 SNHG19 IFT140 RHOT2 MIR6511B1 NME4 RPL3L PDPK1 PRSS27 CAPN15 MIR5587 RAB11FIP3 TBL3 LOC652276 PIGQ LOC101929280 PRR35 MIR6859-4 FAM234A BAIAP3 PGP NPRL3 MIR3180-5 RHBDL1 MIR3176 NPW FBXL16 AMDHD2 NTN3 AXIN1 LOC100287175 LOC100134368 MPG LOC105371045 MAPK8IP3 MIR662 TELO2 SOX8 ERVK13-1 C16orf59 TMEM204 SNRNP25 TPSG1 NUBP2 HAGHL RHBDF1 TRAF7 HBM SPSB3 LMF1 PKD1 MIR6767 DDX11L10 WASIR2 MRPS34 MSLN RPS2 RNF151 LOC105371038 SNORA64 NME3 PRR25 POLR3K CASKIN1 SSTR5-AS1 E4F1 MSRB1 METTL26 TPSB2 SYNGR3 LINC00254 CACNA1H CCDC78 SNORA10 BRICD5 UBE2I C16orf91 SNHG9 MEIOB LOC107987233 ZNF598 ABCA17P RPUSD1 HBQ1 GNG13 PTX4 ATP6V0C LOC106660606 C1QTNF8 RAB40C TPSD1 HS3ST6 EME2 SNORA78 MIR4516 CEMP1 RAB26 MRPL28 MIR3177 RNPS1 ECI1 LOC105371184 UNKL WDR90 SLC9A3R2 GFER LINC00235 HBA1 NARFL MIR940 RPL23AP5 KCTD5 LOC729652 NOXO1 CCDC154 LOC105371049 MIR6768 MIR3178 NTHL1 LMF1-AS1 WFIKKN1 CCNF LOC105371046 FAM173A JMJD8 MLST8 LOC105371047 MCRIP2 CLCN7 PRSS29P FAHD1 CRAMP1 HAGH MIR4717 CHTF18 LOC107984876 TPSAB1 METRN HN1L RGS11 SNORD60 ABCA3 TMEM8A GNPTG LUC7L MIR1225 SSTR5 NHLRC4 FLJ42627 NDUFB10 ARHGDIG PDIA2 DNASE1L2 HBZ MIR3677 WDR24
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss WFIKKN1 RAB40C FAM173A JMJD8 MSLN STUB1 MCRIP2 LOC105371038 RHOT2 PRR25 CAPN15 MIR5587 RAB11FIP3 CHTF18 PIGQ LOC101929280 PRR35 METRN LOC105371184 WDR90 METTL26 RHBDL1 LINC00235 NARFL MIR3176 FBXL16 LOC100287175 CCDC78 NHLRC4 MIR662 LOC107987233 RPUSD1 HAGHL WDR24 GNG13
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss WFIKKN1 RAB40C FAM173A JMJD8 MSLN STUB1 MCRIP2 LOC105371038 RHOT2 PRR25 CAPN15 MIR5587 RAB11FIP3 CHTF18 PIGQ LOC101929280 PRR35 METRN LOC105371184 WDR90 METTL26 RHBDL1 LINC00235 NARFL MIR3176 FBXL16 LOC100287175 CCDC78 NHLRC4 MIR662 LOC107987233 RPUSD1 HAGHL WDR24 GNG13
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LMF1-AS1 WFIKKN1 LMF1 C1QTNF8 RAB40C FAM173A JMJD8 MSLN STUB1 MCRIP2 LOC105371038 RHOT2 PRR25 CAPN15 SSTR5-AS1 MIR5587 RAB11FIP3 CHTF18 PIGQ LOC101929280 LOC107984876 PRR35 METRN LOC105371184 WDR90 METTL26 RHBDL1 LINC00235 NARFL MIR3176 FBXL16 LOC100287175 SSTR5 CCDC78 NHLRC4 MIR662 LOC107987233 RPUSD1 SOX8 HAGHL WDR24 GNG13
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication WFIKKN1 RAB40C FAM173A JMJD8 MSLN STUB1 MCRIP2 LOC105371038 RHOT2 CHTF18 PIGQ LOC101929280 METRN LOC105371184 WDR90 METTL26 RHBDL1 NARFL FBXL16 LOC100287175 CCDC78 MIR662 RPUSD1 HAGHL WDR24 GNG13
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication WFIKKN1 RAB40C FAM173A JMJD8 MSLN STUB1 MCRIP2 LOC105371038 RHOT2 PRR25 CAPN15 MIR5587 RAB11FIP3 CHTF18 PIGQ LOC101929280 PRR35 METRN LOC105371184 WDR90 METTL26 RHBDL1 LINC00235 NARFL MIR3176 FBXL16 LOC100287175 CCDC78 NHLRC4 MIR662 LOC107987233 RPUSD1 HAGHL WDR24 GNG13
nsv571034 Chr.16:767339 - 774098 on Build GRCh38 Gain MIR662 MSLN
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss WDR90 FAM173A JMJD8 RHBDL1 NARFL MSLN STUB1 FBXL16 MCRIP2 LOC105371038 LOC100287175 RHOT2 CCDC78 MIR662 CHTF18 RPUSD1 METRN HAGHL LOC105371184 WDR24 GNG13
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss PRR25 MIR662 CHTF18 MSLN RPUSD1 GNG13
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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