Hs01131846_cn

• Gene Symbol: TRIM46
• Assay Reference Genome Location: Chr.1:155183831 on build GRCh38
• Cytoband: 1q22

Target Gene Details

• Entrez Gene ID: 80128
• Gene Name: tripartite motif containing 46
• Gene Aliases: GENEY, TRIFIC
• Location: Chr.1:155173714-155184971 on Build GRCh38
• Assay Gene Location: Overlaps Intron 14 - Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRIM46	NM_001256599.1			NP_001243528.1
	NM_001256600.1			NP_001243529.1
	NM_001256601.1			NP_001243530.1
	NM_001282378.1			NP_001269307.1
	NM_025058.4			NP_079334.3
	NR_046327.1
	NR_046329.1
	XM_011510002.1			XP_011508304.1
	XM_017002393.1			XP_016857882.1
	AK090504.1	2	708
	AK096158.1
	AK128139.1			BAC87293.1
	AK296300.1
	AK297318.1
	AK309699.1
	AY251386.1			AAP51206.1
	BC126372.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv527682	Chr.1:155177242 - 155227671 on Build GRCh38	Gain	TRIM46 GBAP1 THBS3 MTX1 MUC1 MIR92B
nsv470741	Chr.1:155142784 - 155260340 on Build GRCh38	Loss	KRTCAP2 TRIM46 GBA GBAP1 THBS3 MTX1 MUC1 FAM189B MIR92B SCAMP3
nsv8447	Chr.1:155172153 - 155184461 on Build GRCh38	Gain	KRTCAP2 TRIM46
nsv1010146	Chr.1:155146620 - 155231273 on Build GRCh38	Gain	KRTCAP2 TRIM46 GBAP1 THBS3 MTX1 MUC1 MIR92B
nsv2988	Chr.1:155182130 - 155219701 on Build GRCh38	Insertion	TRIM46 GBAP1 THBS3 MTX1 MUC1 MIR92B
nsv547961	Chr.1:155109822 - 155225189 on Build GRCh38	Loss	KRTCAP2 TRIM46 DPM3 EFNA1 GBAP1 THBS3 SLC50A1 MTX1 MUC1 MIR92B
dgv3n68	Chr.1:155122502 - 155343618 on Build GRCh38	Loss	KRTCAP2 TRIM46 RUSC1 ASH1L SLC50A1 PKLR CLK2 MIR92B HCN3 SCAMP3 GBA DPM3 EFNA1 GBAP1 RUSC1-AS1 THBS3 MTX1 FDPS MUC1 FAM189B LOC105371451

More Information

Additional Information:

For this assay, SNP(s) [rs114809126] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Function(s)

zinc ion binding