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See other SMG1 CNV Assays ›
Gene Symbol
SMG1
Assay Reference Genome
Location

Chr.16:18815219 on build GRCh38
Cytoband
16p12.3
Assay ID Hs01132391_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 23049

Gene Name:

 SMG1, nonsense mediated mRNA decay associated PI3K related kinase

Gene Aliases:

 61E3.4, ATX, LIP

Location:

 Chr.16:18804853-18926417 on Build GRCh38

Assay Gene Location:

 Within Exon 61
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMG1 NM_015092.4 60 10940 NP_055907.3
XM_005255182.3 59 11037 XP_005255239.1
XM_005255183.3 60 11095 XP_005255240.1
XM_005255184.3 58 10881 XP_005255241.1
XM_011545769.2 59 11037 XP_011544071.1
XM_011545770.1 47 8834 XP_011544072.1
XM_017023066.1 59 10847 XP_016878555.1
XM_017023067.1 47 8897 XP_016878556.1
AB007881.2 28 5558 BAA24851.2
AB061371.1 61 10892 BAB70696.1
AF186377.1 35 6921 AAK58892.1
AF395444.1 58 10247 AAM73708.1
AL833298.1 21 4278
AY014957.1 48 8819 AAK00511.1
U32581.2 10 1950 AAA86535.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1044846 Chr.16:18666777 - 18820585 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv833161 Chr.16:18694997 - 18883103 on Build GRCh38 Loss RPS15A ARL6IP1 SMG1
nsv428320 Chr.16:18077459 - 18828668 on Build GRCh38 Loss MIR3670-4 MIR6511A4 ABCC6P1 NOMO2 RPS15A SMG1 NPIPA8 MIR3180-3 LOC105376752 MIR3179-4 MIR6770-3 ARL6IP1 MIR3670-3 MIR3179-3 LOC102723728
nsv469598 Chr.16:18650989 - 18828668 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv571579 Chr.16:18793415 - 19238897 on Build GRCh38 Gain SYT17 TMC7 ARL6IP1 SMG1 COQ7 ITPRIPL2 LOC102723385
esv2758634 Chr.16:17440243 - 19147984 on Build GRCh38 Gain+Loss MIR3670-4 MIR6511A4 ABCC6P1 NOMO2 XYLT1 RPS15A TMC7 SMG1 NPIPA8 COQ7 MIR3180-3 LOC105376752 MIR3179-4 MIR6770-3 ARL6IP1 MIR3670-3 MIR3179-3 ITPRIPL2 LOC102723728 LOC102723385
esv34419 Chr.16:18170242 - 19071899 on Build GRCh38 Gain MIR3670-4 MIR6511A4 ABCC6P1 NOMO2 RPS15A TMC7 SMG1 NPIPA8 COQ7 MIR3180-3 LOC105376752 MIR3179-4 MIR6770-3 ARL6IP1 MIR3670-3 MIR3179-3 LOC102723728 LOC102723385
esv3570409 Chr.16:18759489 - 19177870 on Build GRCh38 Gain SYT17 RPS15A TMC7 ARL6IP1 SMG1 COQ7 ITPRIPL2 LOC102723385
nsv1752 Chr.16:18796774 - 18839756 on Build GRCh38 Deletion ARL6IP1 SMG1

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