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See other JMJD8 CNV Assays ›
Gene Symbol
JMJD8
Assay Reference Genome
Location

Chr.16:683704 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01200296_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 339123

Gene Name:

 jumonji domain containing 8

Gene Aliases:

 C16orf20, PP14397

Location:

 Chr.16:681666-684446 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
JMJD8 NM_001005920.2 NP_001005920.2
NM_001323918.1 NP_001310847.1
NM_001323919.1 NP_001310848.1
NM_001323920.1 NP_001310849.1
NM_001323922.1 NP_001310851.1
NR_136650.1
NR_136651.1
NR_136652.1
AF370420.1 AAQ15256.1
AL524336.3
AL524922.3
BC073785.1 AAH73785.1
BC094850.1 AAH94850.1
BC137100.1
BC137101.1
BG481039.1
BG826580.1
BI463867.1
BI767435.1
BX335015.2
CD674105.1
CN371155.1
DQ074695.1 AAY82251.1
HY023676.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv827480 Chr.16:672775 - 685288 on Build GRCh38 Gain RHOT2 STUB1 LOC105371184 RHBDL1 WDR24 JMJD8
nsv482182 Chr.16:681667 - 684439 on Build GRCh38 Gain STUB1 JMJD8
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NPW FAHD1 TBC1D24 SYNGR3 MIR3178 DNASE1L2 NME4 RAB26 CLCN7 HBA1 NDUFB10 MIR4516 RPL3L MLST8 WFIKKN1 C16orf59 FLJ42627 LOC105371049 LOC100134368 TBL3 CCDC154 LOC107987233 RGS11 IFT140 MSLN LUC7L TSC2 HN1L METRN CHTF18 MIR3180-5 NOXO1 PTX4 PIGQ MRPS34 LOC105371046 ARHGDIG CCDC78 FBXL16 PRR35 CRAMP1 SNORD60 MIR3177 BAIAP3 LOC105371184 MIR940 MPG CEMP1 POLR3K MIR5587 RHBDF1 NTHL1 DDX11L10 NPRL3 SLC9A3R2 ERVK13-1 GNPTG LOC106660606 LOC105371045 MIR6511B1 NTN3 ABCA17P BRICD5 AXIN1 AMDHD2 STUB1 MIR662 MRPL28 MIR3176 TELO2 LOC105371038 MIR4717 SNHG19 LOC105371047 SPSB3 METTL26 LINC00235 TRAF7 PRR25 MIR6768 HAGH RPUSD1 CACNA1H LOC107984876 TPSD1 NME3 SNORA64 MEIOB LOC729652 FAM234A RHBDL1 TSR3 TMEM8A HBA2 JMJD8 RHOT2 HBM PRSS27 KCTD5 MSRB1 SSTR5 WDR24 TPSG1 LOC100287175 C1QTNF8 UBE2I ATP6V0C FAM173A SNHG9 MIR3677 SOX8 PKD1 CCNF PDPK1 ABCA3 WASIR2 IGFALS UNKL LINC00254 MIR6859-4 PDIA2 LMF1-AS1 ZNF598 TPSB2 MAPK8IP3 ECI1 NARFL E4F1 MCRIP2 GNG13 RAB40C CAPN15 LMF1 GFER LOC101929280 HS3ST6 TMEM204 DECR2 SNRNP25 TPSAB1 SNORA78 RNF151 PRSS29P SNORA10 SSTR5-AS1 EME2 NHLRC4 NUBP2 HBQ1 C16orf91 RPL23AP5 PGP HAGHL RNPS1 HBZ RAB11FIP3 MIR1225 WDR90 CASKIN1 MIR6767 RPS2 LOC652276
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss FBXL16 PRR35 RPUSD1 NARFL MCRIP2 LOC105371184 RHBDL1 GNG13 RAB40C CAPN15 JMJD8 RHOT2 LOC101929280 MIR5587 WFIKKN1 WDR24 LOC100287175 FAM173A LOC107987233 NHLRC4 STUB1 MSLN MIR662 MIR3176 METRN CHTF18 LOC105371038 HAGHL RAB11FIP3 PIGQ WDR90 METTL26 LINC00235 CCDC78 PRR25
nsv457311 Chr.16:681725 - 761746 on Build GRCh38 Loss FBXL16 HAGHL FAM173A STUB1 NARFL MSLN WDR24 CCDC78 METRN JMJD8
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss FBXL16 PRR35 RPUSD1 NARFL MCRIP2 LOC105371184 RHBDL1 GNG13 RAB40C CAPN15 JMJD8 RHOT2 LOC101929280 MIR5587 WFIKKN1 WDR24 LOC100287175 FAM173A LOC107987233 NHLRC4 STUB1 MSLN MIR662 MIR3176 METRN CHTF18 LOC105371038 HAGHL RAB11FIP3 PIGQ WDR90 METTL26 LINC00235 CCDC78 PRR25
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion FBXL16 PRR35 LMF1-AS1 RPUSD1 LOC107984876 NARFL MCRIP2 LOC105371184 RHBDL1 GNG13 RAB40C CAPN15 JMJD8 RHOT2 LMF1 LOC101929280 MIR5587 SSTR5 WFIKKN1 WDR24 LOC100287175 C1QTNF8 FAM173A LOC107987233 SSTR5-AS1 NHLRC4 STUB1 MSLN MIR662 SOX8 MIR3176 METRN CHTF18 LOC105371038 HAGHL RAB11FIP3 PIGQ WDR90 METTL26 LINC00235 CCDC78 PRR25
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss FBXL16 FAM173A STUB1 NARFL MCRIP2 LOC105371184 RHBDL1 RAB40C METRN JMJD8 RHOT2 LOC105371038 LOC101929280 HAGHL PIGQ WDR90 METTL26 WFIKKN1 WDR24 LOC100287175 CCDC78
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication FBXL16 RPUSD1 NARFL MCRIP2 LOC105371184 RHBDL1 GNG13 RAB40C JMJD8 RHOT2 LOC101929280 WFIKKN1 WDR24 LOC100287175 FAM173A STUB1 MSLN MIR662 METRN CHTF18 LOC105371038 HAGHL PIGQ WDR90 METTL26 CCDC78
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication FBXL16 PRR35 RPUSD1 NARFL MCRIP2 LOC105371184 RHBDL1 GNG13 RAB40C CAPN15 JMJD8 RHOT2 LOC101929280 MIR5587 WFIKKN1 WDR24 LOC100287175 FAM173A LOC107987233 NHLRC4 STUB1 MSLN MIR662 MIR3176 METRN CHTF18 LOC105371038 HAGHL RAB11FIP3 PIGQ WDR90 METTL26 LINC00235 CCDC78 PRR25
nsv516590 Chr.16:605686 - 748489 on Build GRCh38 Loss FBXL16 FAM173A STUB1 NARFL MCRIP2 LOC105371184 RHBDL1 RAB40C METRN JMJD8 RHOT2 LOC105371038 HAGHL WDR90 METTL26 WFIKKN1 WDR24 LOC100287175 CCDC78
nsv471065 Chr.16:629411 - 739761 on Build GRCh38 Gain FBXL16 FAM173A STUB1 NARFL MCRIP2 LOC105371184 RHBDL1 METRN JMJD8 RHOT2 LOC105371038 HAGHL WDR90 METTL26 WFIKKN1 WDR24 LOC100287175 CCDC78
dgv4825n54 Chr.16:661905 - 761746 on Build GRCh38 Loss FBXL16 FAM173A STUB1 NARFL MSLN LOC105371184 RHBDL1 METRN JMJD8 RHOT2 HAGHL WDR90 WDR24 CCDC78
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss FBXL16 FAM173A RPUSD1 STUB1 NARFL MSLN MIR662 MCRIP2 LOC105371184 RHBDL1 GNG13 METRN CHTF18 JMJD8 RHOT2 LOC105371038 HAGHL WDR90 WDR24 LOC100287175 CCDC78

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein modifying enzyme

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