Hs01244183_cn

• Gene Symbol: LRCH4
• Assay Reference Genome Location: Chr.7:100574580 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 4034
• Gene Name: leucine rich repeats and calponin homology domain containing 4
• Gene Aliases: LRN, LRRN1, LRRN4, PP14183
• Location: Chr.7:100574011-100586188 on Build GRCh38
• Assay Gene Location: Within Exon 18

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRCH4	NM_001289934.1			NP_001276863.1
	NM_002319.4	18	2667	NP_002310.2
	AI491709.1
	BC007634.1	17	2271	AAH07634.1

Target Gene Details

• Entrez Gene ID: 101927655
• Gene Name: ZO-2 associated speckle protein
• Gene Aliases: -
• Location: Chr.7:100574035-100574733 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ZASP	NM_001289933.1	1	154	NP_001276862.1
	FR717257.1	1	154
	HQ401361.1	1	154

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	STAG3 ZKSCAN1 MUC3A LOC102724094 PVRIG2P ZNF3 NAT16 TRIP6 LAMTOR4 SPDYE3 SLC12A9 NYAP1 SRRT MIR4658 CNPY4 AP1S1 AZGP1P1 ACHE AZGP1 GNB2 GPC2 AGFG2 LRCH4 MIR93 MIR25 EPHB4 STAG3L5P-PVRIG2P-PILRB MBLAC1 TAF6 C7orf61 ZNHIT1 POP7 TFR2 TRIM56 PCOLCE FIS1 LOC105375429 MIR6840 ACTL6B MUC12 C7orf43 PLOD3 EPO ZAN VGF PILRB MEPCE TSC22D4 FBXO24 PCOLCE-AS1 MUC17 ZSCAN21 GAL3ST4 PPP1R35 AP4M1 MIR6875 STAG3L5P MIR4653 MOSPD3 SERPINE1 SAP25 GIGYF1 MOGAT3 MIR106B ZASP PMS2P1 UFSP1 PILRA CLDN15 MCM7 ZCWPW1 GATS PVRIG COPS6
nsv951386	Chr.7:100566478 - 100682977 on Build GRCh38	Deletion	PCOLCE GNB2 LOC105375429 ACTL6B AGFG2 LRCH4 MOSPD3 SAP25 GIGYF1 ZASP TFR2 FBXO24 PCOLCE-AS1
nsv831072	Chr.7:100564880 - 100765212 on Build GRCh38	Loss	PCOLCE GNB2 LOC105375429 ACTL6B AGFG2 LRCH4 MOSPD3 EPO SAP25 GIGYF1 ZAN ZASP POP7 TFR2 FBXO24 PCOLCE-AS1
nsv5868	Chr.7:100572375 - 100617023 on Build GRCh38	Deletion	PCOLCE ZASP LRCH4 MOSPD3 FBXO24 SAP25 PCOLCE-AS1

More Information

Additional Information:

For this assay, SNP(s) [rs144874653] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

nervous system development

Function(s)

protein binding