Hs01265101_cn

• Gene Symbol: B4GALNT4
• Assay Reference Genome Location: Chr.11:376333 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 338707
• Gene Name: beta-1,4-N-acetyl-galactosaminyltransferase 4
• Gene Aliases: -
• Location: Chr.11:369773-382117 on Build GRCh38
• Assay Gene Location: Overlaps Exon 14 - Intron 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B4GALNT4	NM_178537.4			NP_848632.2
	XM_017017654.1			XP_016873143.1
	AB089939.1			BAD06471.1
	BC131528.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PGGHG MIR210HG PTDSS2 RASSF7 IRF7 LOC143666 LMNTD2 MIR210 RNH1 PHRF1 LOC101059906 HRAS IFITM3 IFITM1 IFITM5 B4GALNT4 CDHR5 PKP3 LRRC56 SIGIRR IFITM2 ANO9
nsv552776	Chr.11:366710 - 432436 on Build GRCh38	Loss	B4GALNT4 PKP3 SIGIRR ANO9
nsv1118197	Chr.11:374500 - 377100 on Build GRCh38	Deletion	B4GALNT4
esv28392	Chr.11:363975 - 403432 on Build GRCh38	Gain+Loss	B4GALNT4 PKP3
nsv951268	Chr.11:368601 - 503700 on Build GRCh38	Deletion	RNH1 PTDSS2 B4GALNT4 PKP3 SIGIRR ANO9
nsv552770	Chr.11:356090 - 444628 on Build GRCh38	Gain	B4GALNT4 PKP3 SIGIRR ANO9
dgv1505n54	Chr.11:198510 - 470331 on Build GRCh38	Gain	ODF3 PGGHG RIC8A NLRP6 PTDSS2 SIRT3 MIR6743 IFITM3 IFITM1 PSMD13 IFITM5 B4GALNT4 PKP3 SIGIRR IFITM2 BET1L ANO9
nsv1159790	Chr.11:340219 - 491334 on Build GRCh38	Deletion	PTDSS2 B4GALNT4 PKP3 SIGIRR ANO9
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	MIR210HG TMEM80 PTDSS2 TSPAN4 PNPLA2 SNORA52 IRF7 MIR210 RNH1 CD151 PIDD1 PDDC1 B4GALNT4 EPS8L2 PKP3 LRRC56 SIGIRR PANO1 DRD4 ANO9 RPLP2 POLR2L CEND1 SLC25A22 TALDO1 DEAF1 RASSF7 LOC143666 LMNTD2 CRACR2B AP2A2 PHRF1 LOC101059906 HRAS SCT CDHR5 CHID1 LOC171391
dgv1507n54	Chr.11:368778 - 382912 on Build GRCh38	Loss	B4GALNT4

More Information

Additional Information:

For this assay, SNP(s) [rs111622783] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Function(s)

acetylgalactosaminyltransferase activity
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity