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See other ZKSCAN1 CNV Assays ›
Gene Symbol
ZKSCAN1
Assay Reference Genome
Location

Chr.7:100035169 on build GRCh38
Cytoband
7q22.1
Assay ID Hs01266177_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7586

Gene Name:

 zinc finger with KRAB and SCAN domains 1

Gene Aliases:

 9130423L19Rik, KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33

Location:

 Chr.7:100015572-100045523 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZKSCAN1 NM_001287054.1 8 2936 NP_001273983.1
NM_001287055.1 4 2239 NP_001273984.1
NM_003439.2 6 2907 NP_003430.1
XM_005250565.4 XP_005250622.1
AK074116.1 6 2865 BAB84942.1
AK091471.1 4 2208
AK123012.1 1 2909
AL833578.1 6 2883
BC011421.1 1 912 AAH11421.1
BX640646.1 6 2880 CAE45792.1
U09848.1 2 1950 AAC50264.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469687 Chr.7:99974920 - 100157518 on Build GRCh38 Loss ZSCAN21 MIR4658 AZGP1P1 LAMTOR4 C7orf43 CNPY4 COPS6 AZGP1 ZNF3 TAF6 MCM7 MIR106B AP4M1 MIR93 MIR25 ZKSCAN1 MBLAC1
esv2734888 Chr.7:99975623 - 101290285 on Build GRCh38 Deletion MIR6875 MUC17 UFSP1 SPDYE3 LAMTOR4 GIGYF1 STAG3 FBXO24 AGFG2 ACHE MCM7 MIR6840 PPP1R35 FIS1 STAG3L5P PCOLCE-AS1 GNB2 PLOD3 ZASP SLC12A9 GATS MIR4658 GPC2 SRRT C7orf43 ACTL6B MUC12 MUC3A AZGP1 STAG3L5P-PVRIG2P-PILRB TRIM56 TAF6 PILRB MOGAT3 LRCH4 EPO CLDN15 PVRIG2P MIR4653 PMS2P1 NAT16 ZCWPW1 PILRA CNPY4 PVRIG MIR106B GAL3ST4 MEPCE TRIP6 MIR93 MIR25 ZKSCAN1 AP1S1 LOC102724094 TFR2 ZSCAN21 PCOLCE TSC22D4 AZGP1P1 ZNHIT1 C7orf61 MOSPD3 COPS6 ZNF3 SERPINE1 EPHB4 NYAP1 AP4M1 VGF LOC105375429 POP7 ZAN SAP25 MBLAC1

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More Information


Additional Information:

For this assay, SNP(s) [rs139814922] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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