Hs01273030_cn

• Gene Symbol: SCNM1
• Assay Reference Genome Location: Chr.1:151169052 on build GRCh38
• Cytoband: 1q21.3

Target Gene Details

• Entrez Gene ID: 79005
• Gene Name: sodium channel modifier 1
• Gene Aliases: -
• Location: Chr.1:151166022-151170297 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SCNM1	NM_001204856.1	7	840	NP_001191785.1
	NM_024041.3	7	791	NP_076946.1
	NR_037937.1	7	741
	AA374943.1	1	88
	AK056322.1	7	760	BAB71149.1
	AV718162.2
	BC000264.1	7	735	AAH00264.1
	BU540926.1	7	607

Target Gene Details

• Entrez Gene ID: 100534012
• Gene Name: TNFAIP8L2-SCNM1 readthrough
• Gene Aliases: -
• Location: Chr.1:151156629-151170297 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TNFAIP8L2-SCNM1	NM_001204848.1	7	703	NP_001191777.1
	BG531092.1	7	670
	CR999387.1	6	684

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522840	Chr.1:150961247 - 151375270 on Build GRCh38	Gain	ANXA9 VPS72 SCNM1 SELENBP1 RFX5 PRUNE1 SEMA6C TNFAIP8L2 PSMD4 TNFAIP8L2-SCNM1 LYSMD1 PIP5K1A LOC100507670 C1orf56 GBAT2 CERS2 FAM63A MLLT11 TMOD4 BNIPL CDC42SE1 SETDB1 GABPB2 PI4KB ZNF687
dgv2n68	Chr.1:151136983 - 151309302 on Build GRCh38	Loss	TMOD4 VPS72 SEMA6C TNFAIP8L2 SCNM1 PSMD4 TNFAIP8L2-SCNM1 LYSMD1 PIP5K1A PI4KB LOC100507670 ZNF687

More Information

Additional Information:

For this assay, SNP(s) [rs114031237] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Process(es)

mRNA processing
RNA splicing

Function(s)

protein binding
enzyme binding
metal ion binding