Hs01281098_cn

• Gene Symbol: NFATC2IP
• Assay Reference Genome Location: Chr.16:28956304 on build GRCh38
• Cytoband: 16p11.2

Target Gene Details

• Entrez Gene ID: 84901
• Gene Name: nuclear factor of activated T-cells 2 interacting protein
• Gene Aliases: ESC2, NIP45, RAD60
• Location: Chr.16:28950988-28967097 on Build GRCh38
• Assay Gene Location: Overlaps Exon 5 - Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFATC2IP	NM_032815.3			NP_116204.3
	AF458593.1			AAM49721.1
	AK027545.1			BAB55189.1
	AK074761.1			BAC11189.1
	BC018311.1
	BC021551.1
	BC068007.1			AAH68007.1
	BC080628.1			AAH80628.1
	BC101741.1			AAI01742.1
	BC112182.1			AAI12183.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4987n54	Chr.16:28824884 - 29032129 on Build GRCh38	Gain	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
esv3892826	Chr.16:28814728 - 29032129 on Build GRCh38	Gain+Loss	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	ATP2A1-AS1 LOC101928215 SULT1A2 NPIP XPO6 ATXN2L NPIPB6 TUFM SPNS1 CD19 NFATC2IP MIR4517 SBK1 EIF3CL NPIPB9 APOBR CLN3 SULT1A1 RABEP2 IL27 NUPR1 MIR6862-1 SH2B1 ATP2A1 MIR6862-2 MIR4721 NPIPB8 LAT SGF29 RRN3P2 EIF3C
nsv518648	Chr.16:28826194 - 29032129 on Build GRCh38	Loss	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	ATP2A1-AS1 LOC107984832 LOC101928215 SULT1A2 NPIP ATXN2L TUFM SPNS1 CD19 NFATC2IP MIR4517 EIF3CL NPIPB9 APOBR CLN3 SULT1A1 RABEP2 IL27 NUPR1 MIR6862-1 SH2B1 ATP2A1 MIR6862-2 MIR4721 NPIPB8 LAT SGF29 RRN3P2 EIF3C
dgv2831n100	Chr.16:28812594 - 29032542 on Build GRCh38	Gain	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
esv3570454	Chr.16:28799004 - 29032129 on Build GRCh38	Gain	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
nsv571805	Chr.16:28824174 - 29032129 on Build GRCh38	Loss	ATP2A1-AS1 ATXN2L ATP2A1 TUFM MIR4721 SPNS1 LAT CD19 RABEP2 NFATC2IP SH2B1 MIR4517
dgv2830n100	Chr.16:28620264 - 29032542 on Build GRCh38	Gain	NPIPB9 ATP2A1-AS1 SULT1A1 RABEP2 SH2B1 ATXN2L ATP2A1 MIR6862-2 TUFM MIR4721 SPNS1 NPIPB8 LAT CD19 NFATC2IP EIF3C MIR4517

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokine production
protein sumoylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

protein tag