Hs01373348_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137252742 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3	5	599	NP_001004353.2
	NM_001256699.1	5	599	NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1	4	464
	NR_046340.1
	XM_006717113.2	6	745	XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1	5	582	BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1	5	599
	BC144308.2	5	599
	BC144311.1
	BC144314.1	5	599

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	RNF208 TMEM203 NDOR1 C9orf173-AS1 FAM166A SSNA1 STPG3 SLC34A3 CYSRT1 TPRN TUBB4B NRARP EXD3 TOR4A RNF224 NELFB ANAPC2
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	TUBB4B NRARP EXD3 TOR4A RNF224 C9orf173-AS1 FAM166A NELFB STPG3 SLC34A3 CYSRT1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MIR4479 C9orf139 RNF208 CCDC183 NDOR1 ABCA2 C9orf173-AS1 FAM166A PNPLA7 CCDC183-AS1 SLC34A3 PTGDS TPRN EXD3 NELFB UAP1L1 RABL6 NOXA1 MAMDC4 TUBB4B TMEM210 TOR4A C9orf172 LCNL1 PHPT1 C9orf142 NSMF MAN1B1-AS1 MIR3621 GRIN1 SSNA1 PRR31 TRAF2 NRARP FUT7 DPP7 ANAPC2 CLIC3 ENTPD2 TMEM203 MAN1B1 NPDC1 STPG3 ENTPD8 CYSRT1 FBXW5 LRRC26 MIR4292 MIR7114 RNF224 SAPCD2 C8G LOC101930307 EDF1 LCN12
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	RNF208 TMEM203 MIR3621 NDOR1 GRIN1 C9orf173-AS1 FAM166A SSNA1 STPG3 SLC34A3 CYSRT1 TPRN TUBB4B NRARP LRRC26 TMEM210 EXD3 TOR4A RNF224 NELFB ANAPC2
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	RNF208 TMEM203 MIR3621 NDOR1 GRIN1 C9orf173-AS1 FAM166A SSNA1 NOXA1 STPG3 ENTPD8 SLC34A3 CYSRT1 TPRN TUBB4B NRARP LRRC26 TMEM210 EXD3 TOR4A RNF224 NELFB ANAPC2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MIR4479 C9orf139 RNF208 TMEM141 CCDC183 NDOR1 ABCA2 C9orf173-AS1 FAM166A CCDC183-AS1 SLC34A3 FAM69B LINC01451 PTGDS SNORA17A EGFL7 TPRN EXD3 MIR126 NELFB UAP1L1 RABL6 LCN15 MIR6722 MAMDC4 LOC100128593 TUBB4B TMEM210 TOR4A AGPAT2 C9orf172 LCNL1 PHPT1 C9orf142 MAN1B1-AS1 MIR3621 GRIN1 SSNA1 PRR31 TRAF2 NRARP HSPC324 FUT7 LCN8 DPP7 ANAPC2 CLIC3 SNHG7 ENTPD2 TMEM203 MAN1B1 NPDC1 LCN6 STPG3 CYSRT1 FBXW5 LRRC26 MIR4292 LCN10 RNF224 SAPCD2 C8G LOC101930307 EDF1 SNORA17B LCN12

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein