Hs01388621_cn

• Gene Symbol: PSIP1
• Assay Reference Genome Location: Chr.9:15464943 on build GRCh38
• Cytoband: 9p22.3

Target Gene Details

• Entrez Gene ID: 11168
• Gene Name: PC4 and SFRS1 interacting protein 1
• Gene Aliases: DFS70, LEDGF, PAIP, PSIP2, p52, p75
• Location: Chr.9:15464066-15511019 on Build GRCh38
• Assay Gene Location: Within Exon 17

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PSIP1	NM_001128217.2	16	2511	NP_001121689.1
	NM_033222.4	16	2514	NP_150091.2
	AF063020.1	16	2480	AAC25167.1
	AF098483.1	15	2194	AAC97946.1
	AF432220.1	16	2462	AAL99926.1
	BX649155.1	6	3897
	U94319.1	10	1633	AAB52589.1

Target Gene Details

• Entrez Gene ID: 6619
• Gene Name: small nuclear RNA activating complex polypeptide 3
• Gene Aliases: PTFbeta, SNAP50
• Location: Chr.9:15422696-15466751 on Build GRCh38
• Assay Gene Location: Within Intron 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAPC3	XM_017015056.1			XP_016870545.1
	XM_017015057.1			XP_016870546.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv517975	Chr.9:15286448 - 15534072 on Build GRCh38	Loss	TTC39B SNAPC3 PSIP1 LOC107987048

More Information

Additional Information:

For this assay, SNP(s) [rs78732111] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor, RNA metabolism protein, nucleic acid metabolism protein, general transcription factor

Gene Ontology Categories:

Process(es)

mRNA 5'-splice site recognition
transcription, DNA-templated
regulation of transcription, DNA-templated
response to oxidative stress
response to heat
nuclear transport
establishment of integrated proviral latency
transcription from RNA polymerase II promoter
transcription from RNA polymerase III promoter
snRNA transcription
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
poly(A) RNA binding
supercoiled DNA binding
DNA binding