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See other SMG1 CNV Assays ›
Gene Symbol
SMG1
Assay Reference Genome
Location

Chr.16:18812004 on build GRCh38
Cytoband
16p12.3
Assay ID Hs01398329_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 23049

Gene Name:

 SMG1, nonsense mediated mRNA decay associated PI3K related kinase

Gene Aliases:

 61E3.4, ATX, LIP

Location:

 Chr.16:18804853-18926417 on Build GRCh38

Assay Gene Location:

 Within Exon 62
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMG1 NM_015092.4 61 11108 NP_055907.3
XM_005255182.3 60 11205 XP_005255239.1
XM_005255183.3 61 11263 XP_005255240.1
XM_005255184.3 59 11049 XP_005255241.1
XM_011545769.2 60 11202 XP_011544071.1
XM_011545770.1 48 9002 XP_011544072.1
XM_017023066.1 60 11015 XP_016878555.1
XM_017023067.1 48 9065 XP_016878556.1
AB007881.2 29 5726 BAA24851.2
AB061371.1 62 11060 BAB70696.1
AF186377.1 36 7089 AAK58892.1
AF395444.1 59 10415 AAM73708.1
AL833298.1 22 4446
AY014957.1 49 8987 AAK00511.1
U32581.2 11 2118 AAA86535.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1044846 Chr.16:18666777 - 18820585 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv833161 Chr.16:18694997 - 18883103 on Build GRCh38 Loss RPS15A ARL6IP1 SMG1
nsv428320 Chr.16:18077459 - 18828668 on Build GRCh38 Loss MIR3179-3 RPS15A MIR3670-3 LOC102723728 NPIPA8 SMG1 LOC105376752 MIR3179-4 NOMO2 MIR6511A4 ARL6IP1 ABCC6P1 MIR3670-4 MIR6770-3 MIR3180-3
nsv469598 Chr.16:18650989 - 18828668 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv571579 Chr.16:18793415 - 19238897 on Build GRCh38 Gain COQ7 LOC102723385 ARL6IP1 ITPRIPL2 TMC7 SYT17 SMG1
esv2758634 Chr.16:17440243 - 19147984 on Build GRCh38 Gain+Loss MIR3179-3 RPS15A LOC102723385 XYLT1 MIR3670-3 LOC102723728 ITPRIPL2 NPIPA8 TMC7 SMG1 LOC105376752 MIR3179-4 NOMO2 COQ7 MIR6511A4 ARL6IP1 ABCC6P1 MIR3670-4 MIR6770-3 MIR3180-3
esv34419 Chr.16:18170242 - 19071899 on Build GRCh38 Gain MIR3179-3 RPS15A LOC102723385 MIR3670-3 LOC102723728 NPIPA8 TMC7 SMG1 LOC105376752 MIR3179-4 NOMO2 COQ7 MIR6511A4 ARL6IP1 ABCC6P1 MIR3670-4 MIR6770-3 MIR3180-3
esv3570409 Chr.16:18759489 - 19177870 on Build GRCh38 Gain COQ7 RPS15A LOC102723385 ARL6IP1 ITPRIPL2 TMC7 SYT17 SMG1
nsv1752 Chr.16:18796774 - 18839756 on Build GRCh38 Deletion ARL6IP1 SMG1

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