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See other CYHR1 CNV Assays ›
Gene Symbol
CYHR1
Assay Reference Genome
Location

Chr.8:144464231 on build GRCh38
Cytoband
8q24.3
Assay ID Hs01439540_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 50626

Gene Name:

 cysteine and histidine rich 1

Gene Aliases:

 CHRP

Location:

 Chr.8:144449582-144465692 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CYHR1 NM_001129888.1 3 748 NP_001123360.1
NM_032687.3 3 784 NP_116076.1
NM_138496.1 NP_612505.1
XM_006716560.3 3 1001 XP_006716623.1
XM_006716561.3 3 953 XP_006716624.1
XM_017013463.1 XP_016868952.1
XM_017013464.1 XP_016868953.1
XM_017013465.1 XP_016868954.1
XM_017013466.1 XP_016868955.1
AK094514.1
BC005073.1 3 784 AAH05073.1
BC065484.1 3 748 AAH65484.1
BM671891.1 1 429

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv26548 Chr.8:144460914 - 144467035 on Build GRCh38 Gain KIFC2 CYHR1
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss LRRC14 CPSF1 SLC39A4 CYC1 MIR939 HGH1 MAF1 LOC101928953 OPLAH RECQL4 PLEC HSF1 GPT MROH1 MIR661 GPAA1 MIR6849 MIR7112 SPATC1 TONSL-AS1 WDR97 MIR1234 VPS28 MIR6848 BOP1 FOXH1 EXOSC4 MIR6847 MIR6893 MIR6846 PPP1R16A KIFC2 SCRT1 FBXL6 TONSL PARP10 SMPD5 TMEM249 LOC101928902 MFSD3 GRINA ADCK5 DGAT1 SLC52A2 SCX SHARPIN CYHR1
nsv831489 Chr.8:144342140 - 144544026 on Build GRCh38 Loss LRRC14 CPSF1 SLC39A4 MIR939 LOC101928953 RECQL4 GPT MIR6849 TONSL-AS1 MIR1234 VPS28 ARHGAP39 FOXH1 MIR6893 LRRC24 PPP1R16A KIFC2 FBXL6 TONSL TMEM249 LOC101928902 MFSD3 ADCK5 C8orf82 SLC52A2 CYHR1
dgv12439n54 Chr.8:144438306 - 144525122 on Build GRCh38 Loss LRRC14 PPP1R16A TONSL-AS1 MFSD3 KIFC2 LOC101928953 RECQL4 FOXH1 GPT TONSL LRRC24 CYHR1
dgv907n27 Chr.8:144416180 - 144525122 on Build GRCh38 Loss LRRC14 PPP1R16A KIFC2 SLC39A4 LOC101928953 RECQL4 GPT TONSL TONSL-AS1 MFSD3 VPS28 FOXH1 MIR6893 LRRC24 CYHR1
dgv12434n54 Chr.8:144270080 - 144516801 on Build GRCh38 Loss CPSF1 SLC39A4 MIR939 LOC101928953 RECQL4 HSF1 GPT MIR6849 TONSL-AS1 MIR1234 VPS28 MIR6848 BOP1 FOXH1 MIR6893 PPP1R16A KIFC2 SCRT1 FBXL6 TONSL TMEM249 LOC101928902 MFSD3 ADCK5 DGAT1 SLC52A2 CYHR1
esv2759652 Chr.8:144300010 - 144472295 on Build GRCh38 Gain+Loss CPSF1 KIFC2 SLC39A4 SCRT1 MIR939 HSF1 FBXL6 MIR6849 TONSL TMEM249 LOC101928902 TONSL-AS1 ADCK5 MIR1234 VPS28 DGAT1 MIR6848 SLC52A2 MIR6893 CYHR1
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss LRRC14 CPSF1 SLC39A4 CYC1 MIR939 HGH1 MAF1 LOC101928953 OPLAH RECQL4 PLEC HSF1 GPT MROH1 MIR661 GPAA1 MIR6849 MIR7112 SPATC1 TONSL-AS1 WDR97 MIR1234 VPS28 MIR6848 BOP1 FOXH1 EXOSC4 MIR6847 MIR6893 MIR6846 PPP1R16A KIFC2 SCRT1 FBXL6 TONSL PARP10 SMPD5 TMEM249 LOC101928902 MFSD3 GRINA ADCK5 DGAT1 SLC52A2 SCX SHARPIN CYHR1
nsv612946 Chr.8:144463867 - 144469886 on Build GRCh38 Loss KIFC2 CYHR1
dgv12440n54 Chr.8:144463603 - 144474259 on Build GRCh38 Loss KIFC2 FOXH1 CYHR1
nsv612940 Chr.8:144436292 - 144613673 on Build GRCh38 Loss LRRC14 PPP1R16A KIFC2 LOC101928953 RECQL4 GPT TONSL TONSL-AS1 MFSD3 C8orf82 ARHGAP39 FOXH1 LRRC24 CYHR1
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain LRRC14 CPSF1 SLC39A4 CYC1 MIR939 HGH1 MAF1 LOC101928953 OPLAH RECQL4 HSF1 GPT MROH1 GPAA1 MIR6849 MIR7112 SPATC1 TONSL-AS1 WDR97 MIR1234 VPS28 MIR6848 ARHGAP39 BOP1 FOXH1 EXOSC4 MIR6847 MIR6893 MIR6846 LRRC24 ZNF251 PPP1R16A KIFC2 SCRT1 FBXL6 TONSL SMPD5 TMEM249 LOC101928902 MFSD3 ADCK5 C8orf82 DGAT1 SLC52A2 SCX SHARPIN CYHR1
esv29999 Chr.8:144456732 - 144525122 on Build GRCh38 Loss LRRC14 PPP1R16A MFSD3 KIFC2 LOC101928953 RECQL4 FOXH1 GPT LRRC24 CYHR1

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More Information


Additional Information:

For this assay, SNP(s) [rs77204173] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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