Hs01444953_cn

• Gene Symbol: SPATC1L
• Assay Reference Genome Location: Chr.21:46161608 on build GRCh38
• Cytoband: 21q22.3

Target Gene Details

• Entrez Gene ID: 84221
• Gene Name: spermatogenesis and centriole associated 1-like
• Gene Aliases: C21orf56
• Location: Chr.21:46161148-46185159 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1L	NM_001142854.1	5	1856	NP_001136326.1
	NM_032261.4	4	705	NP_115637.3
	XM_005261188.4	5	1631	XP_005261245.1
	XM_011529756.2	3	533	XP_011528058.1
	XM_017028480.1	6	1578	XP_016883969.1
	AK304535.1	5	1856
	AL136871.1	4	633	CAB66805.1
	BC009497.2	3	590
	BC065570.1	3	557
	BC084577.1	4	677	AAH84577.1
	BC093804.1	3	426
	BC112293.1	3	426
	CR533451.1	3	332	CAG38482.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv587952	Chr.21:46128641 - 46162188 on Build GRCh38	Loss	COL6A2 SPATC1L FTCD
nsv1061087	Chr.21:46056174 - 46223305 on Build GRCh38	Loss	COL6A2 LSS SPATC1L FTCD
nsv509804	Chr.21:45879599 - 46235140 on Build GRCh38	Insertion	MCM3AP COL6A2 MCM3AP-AS1 LSS PCBP3 SPATC1L COL6A1 LOC101928796 FTCD
nsv470910	Chr.21:45933861 - 46665076 on Build GRCh38	Gain	C21orf58 DIP2A PRMT2 PCNT S100B DIP2A-IT1 SPATC1L COL6A1 YBEY LOC101928796 FTCD MCM3AP COL6A2 MCM3AP-AS1 LSS PCBP3
nsv1060978	Chr.21:46068159 - 46413726 on Build GRCh38	Gain	C21orf58 MCM3AP COL6A2 MCM3AP-AS1 LSS PCNT SPATC1L YBEY FTCD
nsv470911	Chr.21:46115334 - 46171856 on Build GRCh38	Loss	COL6A2 SPATC1L FTCD
nsv525728	Chr.21:46052727 - 46163592 on Build GRCh38	Loss	COL6A2 SPATC1L FTCD

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function
protein binding