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See other SMG1 CNV Assays ›
Gene Symbol
SMG1
Assay Reference Genome
Location

Chr.16:18817342 on build GRCh38
Cytoband
16p12.3
Assay ID Hs01475638_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 23049

Gene Name:

 SMG1, nonsense mediated mRNA decay associated PI3K related kinase

Gene Aliases:

 61E3.4, ATX, LIP

Location:

 Chr.16:18804853-18926417 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 58 - Exon 58
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMG1 NM_015092.4 NP_055907.3
XM_005255182.3 XP_005255239.1
XM_005255183.3 XP_005255240.1
XM_005255184.3 XP_005255241.1
XM_011545769.2 XP_011544071.1
XM_011545770.1 XP_011544072.1
XM_017023066.1 XP_016878555.1
XM_017023067.1 XP_016878556.1
AB007881.2 BAA24851.2
AB061371.1 BAB70696.1
AF186377.1 AAK58892.1
AF395444.1 AAM73708.1
AL833298.1
AY014957.1 AAK00511.1
U32581.2 AAA86535.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1044846 Chr.16:18666777 - 18820585 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv833161 Chr.16:18694997 - 18883103 on Build GRCh38 Loss RPS15A ARL6IP1 SMG1
nsv428320 Chr.16:18077459 - 18828668 on Build GRCh38 Loss NOMO2 RPS15A MIR3670-4 LOC105376752 LOC102723728 SMG1 MIR3179-4 MIR3179-3 MIR3670-3 MIR6770-3 NPIPA8 MIR6511A4 ARL6IP1 MIR3180-3 ABCC6P1
nsv469598 Chr.16:18650989 - 18828668 on Build GRCh38 Gain RPS15A ARL6IP1 SMG1
nsv571579 Chr.16:18793415 - 19238897 on Build GRCh38 Gain LOC102723385 ITPRIPL2 COQ7 SYT17 ARL6IP1 SMG1 TMC7
esv2758634 Chr.16:17440243 - 19147984 on Build GRCh38 Gain+Loss NOMO2 XYLT1 RPS15A COQ7 MIR3670-4 LOC105376752 LOC102723728 SMG1 MIR3179-4 MIR3179-3 MIR3670-3 LOC102723385 ITPRIPL2 MIR6770-3 NPIPA8 MIR6511A4 ARL6IP1 MIR3180-3 TMC7 ABCC6P1
esv34419 Chr.16:18170242 - 19071899 on Build GRCh38 Gain NOMO2 RPS15A COQ7 MIR3670-4 LOC105376752 LOC102723728 SMG1 MIR3179-4 MIR3179-3 MIR3670-3 LOC102723385 MIR6770-3 NPIPA8 MIR6511A4 ARL6IP1 MIR3180-3 TMC7 ABCC6P1
esv3570409 Chr.16:18759489 - 19177870 on Build GRCh38 Gain LOC102723385 RPS15A ITPRIPL2 COQ7 SYT17 ARL6IP1 SMG1 TMC7
nsv1752 Chr.16:18796774 - 18839756 on Build GRCh38 Deletion ARL6IP1 SMG1

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