Hs01482850_cn

• Gene Symbol: NELFB
• Assay Reference Genome Location: Chr.9:137256376 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 25920
• Gene Name: negative elongation factor complex member B
• Gene Aliases: COBRA1, NELF-B
• Location: Chr.9:137255300-137273548 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NELFB	NM_015456.4			NP_056271.3
	AF464935.1			AAL69965.1
	AK022651.1			BAB14157.1
	AK091056.1
	BC011892.1			AAH11892.1
	DA210427.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	NDOR1 TOR4A RNF208 NRARP TPRN EXD3 SSNA1 SLC34A3 ANAPC2 TMEM203 NELFB TUBB4B FAM166A STPG3 CYSRT1 C9orf173-AS1 RNF224
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	NELFB TUBB4B FAM166A TOR4A STPG3 NRARP CYSRT1 EXD3 C9orf173-AS1 RNF224 SLC34A3
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	CLIC3 CCDC183-AS1 LRRC26 DPP7 CCDC183 ABCA2 TPRN SSNA1 PTGDS PRR31 UAP1L1 TMEM210 SLC34A3 ANAPC2 EDF1 LCN12 LCNL1 STPG3 MAN1B1-AS1 TOR4A MIR3621 C9orf172 RNF208 NSMF MAN1B1 TUBB4B FAM166A ENTPD8 C9orf173-AS1 MIR7114 FBXW5 NDOR1 C9orf142 NELFB GRIN1 RABL6 CYSRT1 MAMDC4 MIR4292 SAPCD2 C8G FUT7 C9orf139 TRAF2 LOC101930307 MIR4479 NRARP EXD3 NPDC1 PNPLA7 TMEM203 NOXA1 ENTPD2 PHPT1 RNF224
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	NDOR1 LRRC26 TOR4A MIR3621 RNF208 NRARP TPRN EXD3 SSNA1 TMEM210 SLC34A3 ANAPC2 TMEM203 NELFB TUBB4B FAM166A GRIN1 STPG3 CYSRT1 C9orf173-AS1 RNF224
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	NDOR1 LRRC26 TOR4A MIR3621 RNF208 NRARP TPRN EXD3 SSNA1 TMEM210 SLC34A3 ANAPC2 TMEM203 NOXA1 NELFB TUBB4B FAM166A ENTPD8 GRIN1 STPG3 CYSRT1 C9orf173-AS1 RNF224
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CLIC3 CCDC183-AS1 LRRC26 MIR6722 DPP7 CCDC183 LCN15 ABCA2 TPRN SSNA1 PTGDS PRR31 UAP1L1 SNHG7 TMEM210 SLC34A3 ANAPC2 EDF1 LCN12 LCNL1 STPG3 MAN1B1-AS1 EGFL7 TOR4A MIR3621 TMEM141 C9orf172 RNF208 MAN1B1 FAM69B TUBB4B FAM166A LOC100128593 C9orf173-AS1 HSPC324 FBXW5 SNORA17A AGPAT2 NDOR1 LINC01451 C9orf142 NELFB GRIN1 LCN8 MIR126 RABL6 CYSRT1 MAMDC4 SNORA17B MIR4292 LCN10 SAPCD2 C8G FUT7 C9orf139 TRAF2 LOC101930307 MIR4479 NRARP EXD3 LCN6 NPDC1 TMEM203 ENTPD2 PHPT1 RNF224

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation from RNA polymerase II promoter
positive regulation of viral transcription

Function(s)

protein binding