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See other ABCF1 CNV Assays ›
Gene Symbol
ABCF1
Assay Reference Genome
Location

Chr.6:30586732 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01501524_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23

Gene Name:

 ATP binding cassette subfamily F member 1

Gene Aliases:

 ABC27, ABC50

Location:

 Chr.6:30571393-30591532 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 20 - Intron 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCF1 NM_001025091.1 NP_001020262.1
NM_001090.2 NP_001081.1
AB209564.1 BAD92801.1
AF027302.1 AAC70891.1
AK298061.1
AL832430.1 CAH10648.1
BC034488.2 AAH34488.1
BC112923.1
U66677.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HCG9 MIR4640 HLA-F-AS1 HCG4B TRIM39 MIR877 HLA-C LOC105375014 GABBR1 HCG22 HCG4 TRIM15 TUBB IFITM4P MDC1 MICA OR2H1 HCG8 HCG17 C6orf136 LINC01015 HCG27 HLA-K PPP1R10 TRIM26 ZFP57 PSORS1C3 DHX16 ABCF1 ZNRD1ASP RNF39 LOC554223 TRIM39-RPP21 PSORS1C2 HLA-L GTF2H4 MAS1L UBD HLA-G MUC22 HCG18 TRIM31-AS1 VARS2 PRR3 OR10C1 CDSN PPP1R11 TRIM40 LINC00243 HLA-J DDR1 OR14J1 ATAT1 CCHCR1 OR12D3 MRPS18B HCG20 PPP1R18 MIR6891 ZNRD1 POU5F1 GNL1 TCF19 HLA-A C6orf15 TRIM31 HLA-B IER3 MUC21 TRIM10 RPP21 DPCR1 MDC1-AS1 MOG OR5V1 HLA-E OR2J2 HLA-H LOC101929006 SNORD32B FLOT1 OR11A1 OR2H2 NRM PSORS1C1 HLA-F SFTA2 OR12D2
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss LINC00243 DDR1 MIR4640 ATAT1 CCHCR1 MRPS18B HCG20 PPP1R18 MIR877 POU5F1 HLA-C GNL1 LOC105375014 TCF19 C6orf15 HCG22 IER3 TUBB MUC21 MDC1 DPCR1 C6orf136 HCG27 MDC1-AS1 PPP1R10 HLA-E PSORS1C3 DHX16 ABCF1 FLOT1 PSORS1C2 GTF2H4 NRM MUC22 PSORS1C1 SFTA2 VARS2 PRR3 CDSN
nsv5244 Chr.6:30577334 - 30622026 on Build GRCh38 Deletion PPP1R10 MRPS18B MIR877 ABCF1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HCG9 MIR4640 LOC100129636 HLA-F-AS1 TRIM27 HCG4B TRIM39 MIR877 LOC105375014 GABBR1 HCG22 HCG4 TRIM15 TUBB LINC00533 IFITM4P MDC1 OR2H1 HCG8 HCG17 C6orf136 LINC01015 HCG27 HLA-K PPP1R10 TRIM26 ZFP57 PSORS1C3 DHX16 ABCF1 ZNRD1ASP RNF39 LOC554223 TRIM39-RPP21 PSORS1C2 HLA-L GTF2H4 MAS1L UBD HLA-G MUC22 HCG18 TRIM31-AS1 VARS2 PRR3 OR10C1 CDSN PPP1R11 TRIM40 LINC00243 HLA-J HCG14 DDR1 OR14J1 OR2W1 ATAT1 CCHCR1 OR12D3 MRPS18B HCG20 PPP1R18 ZNRD1 POU5F1 GNL1 TCF19 HLA-A C6orf15 TRIM31 IER3 MUC21 TRIM10 RPP21 OR2B3 LINC01623 DPCR1 ZNF311 MDC1-AS1 MOG OR2J3 OR5V1 HLA-E OR2J2 HLA-H LOC101929006 SNORD32B FLOT1 OR11A1 OR2H2 NRM PSORS1C1 HLA-F SFTA2 OR12D2 LINC01556 HCG16
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HCG9 MIR4640 HLA-F-AS1 HCG4B TRIM39 MIR877 HLA-C LOC105375014 HCG22 HCG4 TRIM15 TUBB IFITM4P MDC1 HCG8 HCG17 C6orf136 HCG27 HLA-K PPP1R10 TRIM26 PSORS1C3 DHX16 ABCF1 ZNRD1ASP RNF39 LOC554223 TRIM39-RPP21 PSORS1C2 HLA-L GTF2H4 HLA-G MUC22 HCG18 TRIM31-AS1 VARS2 PRR3 CDSN PPP1R11 TRIM40 LINC00243 HLA-J DDR1 ATAT1 CCHCR1 MRPS18B HCG20 PPP1R18 ZNRD1 POU5F1 GNL1 TCF19 HLA-A C6orf15 TRIM31 IER3 MUC21 TRIM10 RPP21 DPCR1 MDC1-AS1 HLA-E HLA-H FLOT1 NRM PSORS1C1 HLA-F SFTA2
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion LINC00243 DDR1 MIR4640 ATAT1 CCHCR1 MRPS18B HCG20 PPP1R18 MIR877 POU5F1 HLA-C GNL1 LOC105375014 TCF19 C6orf15 HCG22 IER3 TUBB MUC21 MDC1 DPCR1 C6orf136 HCG27 MDC1-AS1 PPP1R10 HLA-E PSORS1C3 DHX16 ABCF1 FLOT1 PSORS1C2 GTF2H4 NRM MUC22 PSORS1C1 SFTA2 VARS2 PRR3 CDSN
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HCG9 MIR4640 HCG4B TRIM39 MIR877 HLA-C LOC105375014 HCG22 TRIM15 TUBB MDC1 HCG8 HCG17 C6orf136 HCG27 HLA-K PPP1R10 TRIM26 PSORS1C3 DHX16 ABCF1 ZNRD1ASP RNF39 TRIM39-RPP21 PSORS1C2 HLA-L GTF2H4 MUC22 HCG18 TRIM31-AS1 VARS2 PRR3 CDSN PPP1R11 TRIM40 LINC00243 HLA-J DDR1 ATAT1 CCHCR1 MRPS18B HCG20 PPP1R18 ZNRD1 POU5F1 GNL1 TCF19 HLA-A C6orf15 TRIM31 IER3 MUC21 TRIM10 RPP21 DPCR1 MDC1-AS1 HLA-E HLA-H FLOT1 NRM PSORS1C1 SFTA2
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion LINC00243 DDR1 MIR4640 ATAT1 MRPS18B HCG20 PPP1R18 MIR877 GNL1 LOC105375014 HCG22 IER3 TUBB MUC21 MDC1 DPCR1 C6orf136 MDC1-AS1 PPP1R10 DHX16 ABCF1 FLOT1 GTF2H4 NRM MUC22 SFTA2 VARS2 PRR3
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MIR4640 TRIM39 MIR877 HLA-C LOC105375014 HCG22 TRIM15 TUBB MDC1 MICA HCG26 HCG8 HCG17 C6orf136 HCG27 PPP1R10 TRIM26 PSORS1C3 DHX16 ABCF1 ZNRD1ASP RNF39 TRIM39-RPP21 PSORS1C2 HLA-L GTF2H4 MUC22 HCG18 TRIM31-AS1 VARS2 PRR3 CDSN PPP1R11 TRIM40 LINC00243 HLA-J DDR1 ATAT1 CCHCR1 MRPS18B HCG20 PPP1R18 MIR6891 ZNRD1 POU5F1 GNL1 TCF19 C6orf15 TRIM31 HCP5 HLA-B IER3 MUC21 TRIM10 RPP21 DPCR1 MDC1-AS1 HLA-E FLOT1 NRM LOC102725068 PSORS1C1 SFTA2

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

translation elongation factor

Gene Ontology Categories:

Function(s) Process(es)


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