Hs01517514_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136404634 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AF039688.1			AAC18037.1
	AK001296.1			BAA91607.1
	AY129014.1			AAM98757.1
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	SDCCAG3 PMPCA
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	SNAPC4 SDCCAG3 CARD9 PMPCA INPP5E SEC16A
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	SNAPC4 DNLZ SDCCAG3 CARD9 PMPCA INPP5E SEC16A GPSM1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	EGFL7 SNAPC4 CCDC183-AS1 LCNL1 FUT7 MIR4674 MIR4292 MIR4479 SNORA17A MAN1B1 NOTCH1 HSPC324 DNLZ LINC01451 C8G FAM69B LCN15 SAPCD2 CLIC3 SNORA17B LRRC26 LCN8 C9orf163 ABCA2 PRR31 LOC100128593 EDF1 LCN10 DPP7 ENTPD2 C9orf142 CCDC183 MIR126 TMEM141 PHPT1 NALT1 MIR3621 MIR6722 C9orf139 MAN1B1-AS1 LCN12 C9orf172 UAP1L1 CARD9 LCN6 PMPCA TMEM210 FBXW5 SNHG7 NPDC1 PTGDS LOC101930307 TRAF2 RABL6 GRIN1 MIR4673 SDCCAG3 MAMDC4 INPP5E AGPAT2 SEC16A
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	EGFL7 SNAPC4 CCDC183 CCDC183-AS1 MIR126 TMEM141 PHPT1 GPSM1 NALT1 MIR4674 MIR4292 MIR4479 MIR6722 SNORA17A NOTCH1 HSPC324 DNLZ LINC01451 FAM69B LCN15 C9orf172 CARD9 SNORA17B LCN6 LCN8 PMPCA SNHG7 C9orf163 TRAF2 LOC100128593 RABL6 EDF1 MIR4673 SDCCAG3 MAMDC4 LCN10 INPP5E AGPAT2 SEC16A
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	SNAPC4 DNLZ NACC2 QSOX2 ESP33 CARD9 LOC101928722 PMPCA C9orf163 CCDC187 CAMSAP1 GPSM1 LOC105376323 DKFZP434A062 UBAC1 SDCCAG3 INPP5E C9orf69 SEC16A LHX3 LOC107987142 NOTCH1
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	SNAPC4 SDCCAG3 PMPCA INPP5E SEC16A
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	SNAPC4 NACC2 QSOX2 KCNT1 GPSM1 LOC105376323 UBAC1 NALT1 MIR4674 C9orf69 NOTCH1 DNLZ ESP33 CARD9 LOC101928722 PMPCA C9orf163 CCDC187 CAMSAP1 DKFZP434A062 MIR4673 SDCCAG3 INPP5E SEC16A LHX3 LOC107987142

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding