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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49930857 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01576834_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 2 384 NP_001180575.1
NM_001290746.1 2 355 NP_001277675.1
NM_012068.5 3 589 NP_036200.2
XM_011526629.2 2 291 XP_011524931.1
AB021663.2 2 326 BAA78477.2
AB073613.1 2 322 BAD38650.1
AF305687.1 1 57 AAG22558.1
AK024402.1 2 326
AK091985.1
AK290592.1 3 528
BC005174.2 2 313 AAH05174.1
BF528888.1 2 378
BM462249.1 2 225
BP378116.1 2 382
BU187153.1 2 309
HY011917.1 2 315

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-B2 ZNF114 DHDH CD37 LIG1 SNORD35B RRAS MIR6798 NUP62 PRR12 IL4I1 FUZ ATF5 LOC101928295 FTL TMEM143 PNKP CGB8 SNAR-A12 SPACA4 SIGLEC11 AP2A1 ELSPBP1 PTH2 MIR4749 SNAR-A10 CGB7 GRWD1 SIGLEC16 LOC105372430 RASIP1 MAMSTR SLC6A16 C19orf68 PPP1R15A SNAR-A13 CARD8 SNAR-A14 GRIN2D SNAR-A6 SULT2B1 MIR6799 SNAR-C2 KCNJ14 CGB5 MED25 SNAR-C3 MIR150 LIN7B GFY SEC1P GYS1 SNAR-G2 MIR4324 SNAR-A1 DBP CCDC114 SNAR-A4 LOC100287477 FUT2 CARD8-AS1 IZUMO1 LMTK3 CGB2 SNAR-A9 PLA2G4C-AS1 RCN3 SPHK2 SNAR-C1 PRMT1 SNAR-A8 CCDC155 FUT1 LHB BCAT2 MIR4751 NTF4 PTOV1-AS1 C19orf73 NUCB1 PIH1D1 FLT3LG FGF21 HRC TBC1D17 BSPH1 CPT1C MIR4750 SNAR-A2 AKT1S1 SCAF1 ALDH16A1 IRF3 SNORD34 FCGRT SNORD33 MIR6800 PTOV1 TRPM4 BCL2L12 SNAR-A11 SNAR-C4 SNAR-G1 TEAD2 CGB3 VRK3 SNAR-C5 ZNF473 RPL13A SYNGR4 SNRNP70 DKKL1 FAM83E PTOV1-AS2 MIR5088 RUVBL2 EMP3 SNAR-A7 PLEKHA4 CABP5 SNAR-A5 CYTH2 CA11 BAX ADM5 LOC105447645 PLA2G4C SNAR-D PPFIA3 SLC17A7 KCNA7 SNAR-A3 RPL18 TULP2 CGB1 PRRG2 SNORD35A SNAR-B1 LOC101059948 NTN5 TSKS KDELR1 RPS11 FLJ26850 NUCB1-AS1 SNORD32A NOSIP HSD17B14
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain SIGLEC11 IL4I1 MIR4751 ATF5 SIGLEC16 VRK3 NUP62
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss MIR4750 AKT1S1 AP2A1 MIR4751 PTOV1-AS2 MIR6799 MIR4749 MIR6800 PTOV1-AS1 MED25 PTOV1 TSKS NUP62 IL4I1 FUZ ATF5 TBC1D17 PNKP
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MIR4751 PTOV1-AS2 MIR6799 MIR5088 RRAS PTOV1-AS1 MED25 ADM5 NUP62 PRR12 IL4I1 FUZ ATF5 TBC1D17 PNKP CPT1C PRRG2 MIR4750 AKT1S1 AP2A1 SCAF1 IRF3 MIR4749 MIR6800 PTOV1 TSKS BCL2L12 PRMT1 NOSIP
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain SIGLEC11 IL4I1 MIR4751 ATF5 NUP62
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain MIR4750 SIGLEC11 AKT1S1 IL4I1 MIR4751 ATF5 SIGLEC16 VRK3 TBC1D17 ZNF473 NUP62
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss MIR4750 SIGLEC11 AKT1S1 MIR4751 PTOV1-AS2 MIR4749 SIGLEC16 PTOV1-AS1 PTOV1 NUP62 IL4I1 ATF5 VRK3 TBC1D17 PNKP
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain SIGLEC11 IL4I1 MIR4751 ATF5 NUP62
nsv579911 Chr.19:49930731 - 49969159 on Build GRCh38 Gain SIGLEC11 MIR4751 ATF5

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