Hs01579075_cn

• Gene Symbol: BTNL9
• Assay Reference Genome Location: Chr.5:181054268 on build GRCh38
• Cytoband: 5q35.3

Target Gene Details

• Entrez Gene ID: 153579
• Gene Name: butyrophilin like 9
• Gene Aliases: BTN3, BTN8, VDLS1900
• Location: Chr.5:181039875-181061525 on Build GRCh38
• Assay Gene Location: Overlaps Intron 7 - Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BTNL9	NM_001308245.1			NP_001295174.1
	NM_152547.4			NP_689760.2
	XM_006714823.3			XP_006714886.1
	XM_006714824.3			XP_006714887.1
	XM_006714825.3			XP_006714888.1
	XM_011534444.2			XP_011532746.1
	XM_017009113.1			XP_016864602.1
	XM_017009114.1			XP_016864603.1
	XM_017009115.1			XP_016864604.1
	XM_017009116.1			XP_016864605.1
	XM_017009117.1			XP_016864606.1
	AK057097.1			BAB71365.1
	AK309516.1	3	786
	AY358358.1			AAQ88724.1
	BC029040.1			AAH29040.1
	BC042112.1			AAH42112.1
	BC062459.1			AAH62459.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv10250n54	Chr.5:181004169 - 181086467 on Build GRCh38	Gain	BTNL3 BTNL9 MIR8089
dgv5860n100	Chr.5:181050449 - 181105284 on Build GRCh38	Gain	BTNL9
nsv1161326	Chr.5:181015920 - 181105296 on Build GRCh38	Duplication	BTNL9 MIR8089
dgv5857n100	Chr.5:180964290 - 181062103 on Build GRCh38	Gain	BTNL3 BTNL9 MIR8089
esv3607804	Chr.5:181048691 - 181056724 on Build GRCh38	Loss	BTNL9
dgv5859n100	Chr.5:181015388 - 181112713 on Build GRCh38	Gain	BTNL9 MIR8089
nsv509112	Chr.5:181006674 - 181066955 on Build GRCh38	Insertion	BTNL3 BTNL9 MIR8089
dgv5858n100	Chr.5:181006225 - 181064462 on Build GRCh38	Gain	BTNL3 BTNL9 MIR8089
esv2759400	Chr.5:180951781 - 181061943 on Build GRCh38	Gain	BTNL8 BTNL3 BTNL9 MIR8089
esv3607801	Chr.5:181003202 - 181054245 on Build GRCh38	Gain	BTNL3 BTNL9 MIR8089
nsv5162	Chr.5:181022478 - 181067732 on Build GRCh38	Insertion	BTNL9 MIR8089
nsv428133	Chr.5:180805451 - 181359487 on Build GRCh38	Gain	BTNL3 BTNL9 MIR8089 TRIM52-AS1 LOC100132062 TRIM52 OR4F3 RACK1 TRIM41 LOC102577426 ZFP62 OR2V1 MGAT1 BTNL8 SNORD96A HEIH OR2V2 MIR4638 SNORD95 CTC-338M12.4 LINC00847 TRIM7
esv2763931	Chr.5:180951710 - 181100455 on Build GRCh38	Gain+Loss	BTNL8 BTNL3 BTNL9 MIR8089
dgv5855n100	Chr.5:180945156 - 181064462 on Build GRCh38	Gain	BTNL8 BTNL3 BTNL9 MIR8089
nsv471062	Chr.5:181006880 - 181187665 on Build GRCh38	Gain	BTNL9 MIR8089 OR2V2 OR2V1
esv3890777	Chr.5:181028372 - 181075321 on Build GRCh38	Gain	BTNL9 MIR8089
nsv950743	Chr.5:181035901 - 181063200 on Build GRCh38	Deletion	BTNL9 MIR8089

More Information

Additional Information:

For this assay, SNP(s) [rs199923246] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily