Hs01590559_cn

• Gene Symbol: PATL1
• Assay Reference Genome Location: Chr.11:59636915 on build GRCh38
• Cytoband: 11q12.1

Target Gene Details

• Entrez Gene ID: 219988
• Gene Name: PAT1 homolog 1, processing body mRNA decay factor
• Gene Aliases: Pat1b, hPat1b
• Location: Chr.11:59636716-59669040 on Build GRCh38
• Assay Gene Location: Within Exon 21

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PATL1	NM_152716.2	19	3931	NP_689929.2
	XM_005273833.4	19	5053	XP_005273890.1
	XM_005273834.1	18	3843	XP_005273891.1
	XM_011544811.2	15	3266	XP_011543113.1
	XM_017017339.1	20	4007	XP_016872828.1
	AB065087.1	4	1830	BAB93524.1
	AK094193.1	16	3442	BAC04305.1
	AK127649.1	8	2373
	AL831992.2	19	3872	CAD89916.1
	BC065264.1	16	3425
	BC111047.1	17	3593	AAI11048.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv832172	Chr.11:59628934 - 59663642 on Build GRCh38	Loss	PATL1

More Information

Additional Information:

For this assay, SNP(s) [rs76478883] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

deadenylation-dependent decapping of nuclear-transcribed mRNA
cytoplasmic mRNA processing body assembly
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Function(s)

RNA binding
protein binding
poly(U) RNA binding
poly(G) binding
poly(A) RNA binding