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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31662307 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01627698_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 4 1715 NP_001186166.1
NM_001199238.1 4 1584 NP_001186167.1
NM_001199239.1 4 1581 NP_001186168.1
NM_001199240.1 4 1367 NP_001186169.1
NM_033177.3 3 1691 NP_149417.1
XM_005249403.3 4 1718 XP_005249460.1
XM_006715204.1 4 1396 XP_006715267.1
XM_011514909.1 4 1436 XP_011513211.1
XM_011514910.1 4 1433 XP_011513212.1
AJ420471.1 3 1283
AK123707.1 4 1715
AK314056.1
BC008783.1 3 1681 AAH08783.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv462871 Chr.6:31607499 - 31664357 on Build GRCh38 Loss MIR6832 SNORA38 PRRC2A C6orf47 GPANK1 BAG6 APOM AIF1
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LY6G6E HCG23 LY6G5C SAPCD1-AS1 C4A MIR1236 MIR6721 GPSM3 SKIV2L AIF1 HLA-DRA PRRT1 LOC101929163 TNXB LOC102725068 C6orf25 TNXA NOTCH4 CYP21A1P ATP6V1G2 RNF5 BTNL2 EHMT2 MICB LSM2 VWA7 C6orf48 GPANK1 BAG6 NELFE CLIC1 HLA-DRB1 LOC100287329 MCCD1 MSH5-SAPCD1 DXO NCR3 LTB PBX2 HLA-DRB6 SNORD84 C2-AS1 LY6G6C PRRC2A MIR4646 EGFL8 MIR6833 FKBPL NFKBIL1 ATF6B CFB C6orf47 SNORD48 NEU1 HSPA1A HCP5 SAPCD1 LOC100507547 SNORA38 LY6G6D ZBTB12 TNF CSNK2B C6orf10 C2 ABHD16A SNORD117 SLC44A4 DDAH2 MSH5 DDX39B-AS1 AGPAT1 MIR6832 PPT2 LST1 HSPA1B C4B LTA PPT2-EGFL8 VARS LY6G5B HSPA1L HLA-DRB5 LY6G6F AGER HCG26 DDX39B CYP21A2 SNORD52 ATP6V1G2-DDX39B APOM STK19
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LY6G6E HLA-DQB1 MIR5004 SAPCD1-AS1 KIFC1 C4A MIR1236 PSMB8 MIR6721 GPSM3 TAP1 PRRT1 LOC101929163 TNXB CYP21A1P BTNL2 PHF1 MICB LSM2 GPANK1 NELFE PSMB8-AS1 PSMB9 HLA-DRB1 MCCD1 NCR3 WDR46 SLC39A7 LTB PBX2 HCG25 LY6G6C PRRC2A EGFL8 MIR6833 ATF6B CFB SNORD48 NEU1 HCP5 SAPCD1 LOC100507547 LY6G6D VPS52 CSNK2B C2 MIR3135B DAXX MSH5 DDX39B-AS1 AGPAT1 PPT2 C4B LTA PPT2-EGFL8 LY6G5B ZBTB22 LY6G6F COL11A2 MIR6834 CYP21A2 SNORD52 HLA-DPA1 HLA-DMA PPP1R2P1 RGL2 MIR219A1 TAPBP RXRB HCG23 LY6G5C SKIV2L AIF1 LOC100294145 HLA-DRA LOC102725068 C6orf25 ZBTB9 HLA-DOB TNXA NOTCH4 ATP6V1G2 RNF5 EHMT2 HLA-DQA1 VWA7 HLA-DOA C6orf48 BAG6 CLIC1 HLA-DQA2 LOC100287329 MSH5-SAPCD1 SYNGAP1 DXO CUTA HLA-DRB6 SNORD84 C2-AS1 MIR4646 FKBPL MIR6873 NFKBIL1 C6orf47 HSPA1A BRD2 TAP2 SNORA38 ZBTB12 RPS18 B3GALT4 TNF C6orf10 ABHD16A SNORD117 RING1 SLC44A4 DDAH2 MIR6832 LST1 HSPA1B HCG24 VARS HSPA1L HLA-DMB HLA-DRB5 AGER HLA-DQB2 PFDN6 HCG26 DDX39B HLA-DPB2 HSD17B8 ATP6V1G2-DDX39B HLA-DQB1-AS1 APOM STK19 HLA-DPB1
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LY6G6E LY6G5C SAPCD1-AS1 C4A MIR1236 SKIV2L AIF1 TNXB LOC102725068 C6orf25 TNXA CYP21A1P ATP6V1G2 EHMT2 MICB LSM2 VWA7 C6orf48 GPANK1 BAG6 NELFE CLIC1 LOC100287329 MCCD1 MSH5-SAPCD1 DXO NCR3 LTB SNORD84 C2-AS1 LY6G6C PRRC2A MIR4646 NFKBIL1 CFB C6orf47 SNORD48 NEU1 HSPA1A HCP5 SAPCD1 SNORA38 LY6G6D ZBTB12 MICA TNF CSNK2B C2 ABHD16A SNORD117 SLC44A4 DDAH2 MSH5 DDX39B-AS1 MIR6832 LST1 HSPA1B C4B LTA VARS MIR6891 LY6G5B HSPA1L LY6G6F HCG26 DDX39B CYP21A2 SNORD52 ATP6V1G2-DDX39B HLA-B APOM STK19
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LY6G6E HLA-DQB1 MIR5004 SAPCD1-AS1 KIFC1 C4A MIR1236 PSMB8 MIR6721 GPSM3 TAP1 PRRT1 LOC101929163 TNXB CYP21A1P BTNL2 PHF1 MICB LSM2 GPANK1 NELFE PSMB8-AS1 PSMB9 HLA-DRB1 MCCD1 NCR3 WDR46 SLC39A7 LTB PBX2 HCG25 LY6G6C PRRC2A EGFL8 MIR6833 ATF6B CFB SNORD48 NEU1 HCP5 SAPCD1 LOC100507547 LY6G6D VPS52 CSNK2B C2 MIR3135B DAXX MSH5 DDX39B-AS1 AGPAT1 PPT2 C4B LTA PPT2-EGFL8 LY6G5B ZBTB22 LY6G6F COL11A2 MIR6834 CYP21A2 SNORD52 HLA-DPA1 HLA-DMA PPP1R2P1 RGL2 MIR219A1 TAPBP RXRB HCG23 LY6G5C SKIV2L AIF1 LOC100294145 HLA-DRA LOC102725068 C6orf25 ZBTB9 HLA-DOB TNXA NOTCH4 ATP6V1G2 RNF5 EHMT2 HLA-DQA1 VWA7 HLA-DOA C6orf48 BAG6 CLIC1 HLA-DQA2 LOC100287329 MSH5-SAPCD1 SYNGAP1 DXO CUTA HLA-DRB6 SNORD84 C2-AS1 MIR4646 FKBPL MIR6873 NFKBIL1 C6orf47 HSPA1A BRD2 TAP2 SNORA38 ZBTB12 RPS18 B3GALT4 TNF C6orf10 ABHD16A SNORD117 RING1 SLC44A4 DDAH2 MIR6832 LST1 HSPA1B HCG24 VARS HSPA1L HLA-DMB HLA-DRB5 AGER HLA-DQB2 PFDN6 HCG26 DDX39B HLA-DPB2 HSD17B8 ATP6V1G2-DDX39B HLA-DQB1-AS1 APOM STK19 HLA-DPB1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LY6G6E HCG23 LY6G5C SAPCD1-AS1 C4A MIR1236 MIR6721 GPSM3 SKIV2L AIF1 HLA-DRA PRRT1 LOC101929163 TNXB LOC102725068 C6orf25 TNXA NOTCH4 CYP21A1P ATP6V1G2 RNF5 BTNL2 EHMT2 MICB LSM2 VWA7 C6orf48 GPANK1 BAG6 NELFE CLIC1 LOC100287329 MCCD1 MSH5-SAPCD1 DXO NCR3 LTB PBX2 SNORD84 C2-AS1 LY6G6C PRRC2A MIR4646 EGFL8 MIR6833 FKBPL NFKBIL1 ATF6B CFB C6orf47 SNORD48 NEU1 HSPA1A HCP5 SAPCD1 LOC100507547 SNORA38 LY6G6D ZBTB12 MICA TNF CSNK2B C6orf10 C2 ABHD16A SNORD117 SLC44A4 DDAH2 MSH5 DDX39B-AS1 AGPAT1 MIR6832 PPT2 LST1 HSPA1B C4B LTA PPT2-EGFL8 VARS MIR6891 LY6G5B HSPA1L LY6G6F AGER HCG26 DDX39B CYP21A2 SNORD52 ATP6V1G2-DDX39B HLA-B APOM STK19
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion MIR6832 LY6G6E LY6G5C PRRC2A MIR4646 LY6G5B C6orf47 GPANK1 BAG6 LY6G6F AIF1 SNORA38 CSNK2B ABHD16A APOM
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss LY6G5C PRRC2A NFKBIL1 C6orf47 AIF1 SNORA38 TNF CSNK2B ABHD16A SNORD117 ATP6V1G2 DDX39B-AS1 MIR6832 LST1 LTA LY6G5B GPANK1 BAG6 LOC100287329 MCCD1 DDX39B NCR3 LTB ATP6V1G2-DDX39B APOM SNORD84

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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