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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31664391 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01636661_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 3 773 NP_001186166.1
NM_001199238.1 3 642 NP_001186167.1
NM_001199239.1 3 639 NP_001186168.1
NM_001199240.1 3 425 NP_001186169.1
NM_033177.3 2 749 NP_149417.1
XM_005249403.3 3 776 XP_005249460.1
XM_006715204.1 3 454 XP_006715267.1
XM_011514909.1 3 494 XP_011513211.1
XM_011514910.1 3 491 XP_011513212.1
AF087962.1 1 321
AJ420471.1 2 341
AK123707.1 3 773
AK314056.1 3 642
BC008783.1 2 739 AAH08783.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv462871 Chr.6:31607499 - 31664357 on Build GRCh38 Loss SNORA38 GPANK1 BAG6 PRRC2A C6orf47 APOM MIR6832 AIF1
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LOC100507547 SNORA38 PRRT1 NELFE HCG23 BTNL2 MSH5-SAPCD1 MICB LY6G6D LY6G5B HCP5 CSNK2B SAPCD1 C2 MIR1236 MIR4646 C4A CLIC1 MIR6832 C6orf48 HLA-DRA C2-AS1 STK19 RNF5 PBX2 EGFL8 SNORD117 LY6G6C DXO AGER C6orf10 TNXB ATP6V1G2-DDX39B NCR3 SNORD52 DDAH2 LSM2 NEU1 APOM ZBTB12 ATP6V1G2 AIF1 HCG26 CFB MSH5 DDX39B-AS1 NFKBIL1 ATF6B LOC102725068 HSPA1A CYP21A2 LTA LOC100287329 SKIV2L MIR6721 LOC101929163 LY6G6E LST1 C6orf47 LY6G6F HSPA1B EHMT2 MIR6833 C6orf25 SNORD84 HLA-DRB6 SNORD48 VARS GPANK1 BAG6 VWA7 C4B LTB NOTCH4 PPT2 HSPA1L HLA-DRB5 SAPCD1-AS1 TNF MCCD1 TNXA CYP21A1P AGPAT1 PPT2-EGFL8 PRRC2A LY6G5C GPSM3 HLA-DRB1 DDX39B ABHD16A SLC44A4 FKBPL
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LOC100507547 NELFE HCG23 KIFC1 MICB LY6G5B CSNK2B C2 MIR1236 MIR4646 HLA-DPB1 C6orf48 STK19 RNF5 PBX2 SNORD117 CUTA DXO HLA-DQA1 TNXB ATP6V1G2-DDX39B PSMB8 DDAH2 NEU1 ZBTB12 ATP6V1G2 HCG26 CFB MIR6834 DDX39B-AS1 TAP1 NFKBIL1 HLA-DPA1 ATF6B HSPA1A CYP21A2 LOC100287329 HLA-DQB2 LOC101929163 SYNGAP1 LST1 C6orf47 ZBTB9 HLA-DOA LY6G6F HSPA1B MIR3135B EHMT2 MIR6833 C6orf25 SNORD84 HCG24 GPANK1 VWA7 LTB RXRB VPS52 HSPA1L HLA-DRB5 AGPAT1 GPSM3 HSD17B8 DDX39B FKBPL COL11A2 PPP1R2P1 SNORA38 PRRT1 HLA-DOB HLA-DMB PFDN6 MIR5004 MIR6873 BTNL2 RGL2 MSH5-SAPCD1 LY6G6D HCP5 HCG25 SAPCD1 C4A CLIC1 MIR6832 HLA-DRA C2-AS1 EGFL8 TAPBP LY6G6C AGER C6orf10 MIR219A1 NCR3 WDR46 SNORD52 LSM2 B3GALT4 HLA-DQA2 APOM PSMB8-AS1 AIF1 MSH5 PSMB9 LOC102725068 LOC100294145 LTA SKIV2L BRD2 MIR6721 TAP2 HLA-DPB2 LY6G6E PHF1 SLC39A7 HLA-DMA HLA-DRB6 SNORD48 VARS HLA-DQB1 BAG6 C4B NOTCH4 PPT2 SAPCD1-AS1 ZBTB22 TNF MCCD1 TNXA RING1 CYP21A1P HLA-DQB1-AS1 PPT2-EGFL8 PRRC2A LY6G5C RPS18 HLA-DRB1 ABHD16A DAXX SLC44A4
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MICA SNORA38 NELFE MIR6891 MSH5-SAPCD1 MICB LY6G6D HLA-B LY6G5B HCP5 CSNK2B SAPCD1 C2 MIR1236 MIR4646 C4A CLIC1 MIR6832 C6orf48 C2-AS1 STK19 SNORD117 LY6G6C DXO TNXB ATP6V1G2-DDX39B NCR3 SNORD52 DDAH2 LSM2 NEU1 APOM ZBTB12 ATP6V1G2 AIF1 HCG26 CFB MSH5 DDX39B-AS1 NFKBIL1 LOC102725068 HSPA1A CYP21A2 LTA LOC100287329 SKIV2L LY6G6E LST1 C6orf47 LY6G6F HSPA1B EHMT2 C6orf25 SNORD84 SNORD48 VARS GPANK1 BAG6 VWA7 C4B LTB HSPA1L SAPCD1-AS1 TNF MCCD1 TNXA CYP21A1P PRRC2A LY6G5C DDX39B ABHD16A SLC44A4
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LOC100507547 NELFE HCG23 KIFC1 MICB LY6G5B CSNK2B C2 MIR1236 MIR4646 HLA-DPB1 C6orf48 STK19 RNF5 PBX2 SNORD117 CUTA DXO HLA-DQA1 TNXB ATP6V1G2-DDX39B PSMB8 DDAH2 NEU1 ZBTB12 ATP6V1G2 HCG26 CFB MIR6834 DDX39B-AS1 TAP1 NFKBIL1 HLA-DPA1 ATF6B HSPA1A CYP21A2 LOC100287329 HLA-DQB2 LOC101929163 SYNGAP1 LST1 C6orf47 ZBTB9 HLA-DOA LY6G6F HSPA1B MIR3135B EHMT2 MIR6833 C6orf25 SNORD84 HCG24 GPANK1 VWA7 LTB RXRB VPS52 HSPA1L HLA-DRB5 AGPAT1 GPSM3 HSD17B8 DDX39B FKBPL COL11A2 PPP1R2P1 SNORA38 PRRT1 HLA-DOB HLA-DMB PFDN6 MIR5004 MIR6873 BTNL2 RGL2 MSH5-SAPCD1 LY6G6D HCP5 HCG25 SAPCD1 C4A CLIC1 MIR6832 HLA-DRA C2-AS1 EGFL8 TAPBP LY6G6C AGER C6orf10 MIR219A1 NCR3 WDR46 SNORD52 LSM2 B3GALT4 HLA-DQA2 APOM PSMB8-AS1 AIF1 MSH5 PSMB9 LOC102725068 LOC100294145 LTA SKIV2L BRD2 MIR6721 TAP2 HLA-DPB2 LY6G6E PHF1 SLC39A7 HLA-DMA HLA-DRB6 SNORD48 VARS HLA-DQB1 BAG6 C4B NOTCH4 PPT2 SAPCD1-AS1 ZBTB22 TNF MCCD1 TNXA RING1 CYP21A1P HLA-DQB1-AS1 PPT2-EGFL8 PRRC2A LY6G5C RPS18 HLA-DRB1 ABHD16A DAXX SLC44A4
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MICA LOC100507547 SNORA38 PRRT1 NELFE MIR6891 HCG23 BTNL2 MSH5-SAPCD1 MICB LY6G6D HLA-B LY6G5B HCP5 CSNK2B SAPCD1 C2 MIR1236 MIR4646 C4A CLIC1 MIR6832 C6orf48 HLA-DRA C2-AS1 STK19 RNF5 PBX2 EGFL8 SNORD117 LY6G6C DXO AGER C6orf10 TNXB ATP6V1G2-DDX39B NCR3 SNORD52 DDAH2 LSM2 NEU1 APOM ZBTB12 ATP6V1G2 AIF1 HCG26 CFB MSH5 DDX39B-AS1 NFKBIL1 ATF6B LOC102725068 HSPA1A CYP21A2 LTA LOC100287329 SKIV2L MIR6721 LOC101929163 LY6G6E LST1 C6orf47 LY6G6F HSPA1B EHMT2 MIR6833 C6orf25 SNORD84 SNORD48 VARS GPANK1 BAG6 VWA7 C4B LTB NOTCH4 PPT2 HSPA1L SAPCD1-AS1 TNF MCCD1 TNXA CYP21A1P AGPAT1 PPT2-EGFL8 PRRC2A LY6G5C GPSM3 DDX39B ABHD16A SLC44A4 FKBPL
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion SNORA38 GPANK1 BAG6 LY6G5B CSNK2B LY6G6E PRRC2A C6orf47 LY6G6F MIR4646 LY6G5C APOM MIR6832 AIF1 ABHD16A
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss SNORA38 DDX39B-AS1 NFKBIL1 LTA LOC100287329 LY6G5B CSNK2B LST1 C6orf47 MIR6832 SNORD84 GPANK1 BAG6 LTB SNORD117 ATP6V1G2-DDX39B NCR3 TNF MCCD1 PRRC2A LY6G5C APOM DDX39B ATP6V1G2 AIF1 ABHD16A

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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