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See other ABCF1 CNV Assays ›
Gene Symbol
ABCF1
Assay Reference Genome
Location

Chr.6:30586529 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01641915_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23

Gene Name:

 ATP binding cassette subfamily F member 1

Gene Aliases:

 ABC27, ABC50

Location:

 Chr.6:30571393-30591532 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 19 - Intron 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCF1 NM_001025091.1 NP_001020262.1
NM_001090.2 NP_001081.1
AB209564.1 BAD92801.1
AF027302.1 AAC70891.1
AK298061.1
AL832430.1 CAH10648.1
BC034488.2 AAH34488.1
BC112923.1
U66677.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion SNORD32B MDC1-AS1 POU5F1 OR14J1 PPP1R18 HLA-K OR2J2 TRIM10 TCF19 GABBR1 SFTA2 MUC21 GTF2H4 OR2H1 DPCR1 MIR4640 PRR3 LINC00243 TRIM39 HCG4 LINC01015 HCG9 HLA-H TRIM40 MUC22 HLA-B TRIM15 UBD HCG22 HLA-F-AS1 PSORS1C3 PPP1R10 OR5V1 OR2H2 HCG27 PSORS1C2 DDR1 RNF39 HLA-F LOC105375014 TRIM31 HLA-G HLA-E TRIM26 OR12D2 ABCF1 MAS1L RPP21 VARS2 IFITM4P DHX16 GNL1 ZFP57 CCHCR1 TUBB OR10C1 HCG8 C6orf15 MDC1 FLOT1 HLA-C HCG17 ATAT1 PPP1R11 HLA-A PSORS1C1 MOG ZNRD1 OR12D3 NRM MICA TRIM31-AS1 MIR6891 LOC554223 TRIM39-RPP21 IER3 C6orf136 CDSN HLA-L MRPS18B LOC101929006 HCG20 MIR877 HCG18 OR11A1 HLA-J HCG4B ZNRD1ASP
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss HCG27 PSORS1C2 DDR1 MDC1-AS1 LOC105375014 POU5F1 HLA-E PPP1R18 TCF19 ABCF1 VARS2 DHX16 GNL1 SFTA2 CCHCR1 MUC21 TUBB GTF2H4 C6orf15 MDC1 DPCR1 MIR4640 FLOT1 HLA-C ATAT1 PRR3 PSORS1C1 LINC00243 NRM IER3 C6orf136 CDSN MUC22 MRPS18B HCG20 MIR877 HCG22 PSORS1C3 PPP1R10
nsv5244 Chr.6:30577334 - 30622026 on Build GRCh38 Deletion MRPS18B ABCF1 MIR877 PPP1R10
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion SNORD32B MDC1-AS1 TRIM27 POU5F1 OR14J1 OR2B3 PPP1R18 HLA-K OR2J2 TRIM10 TCF19 GABBR1 SFTA2 MUC21 GTF2H4 OR2H1 DPCR1 MIR4640 PRR3 LINC00243 TRIM39 HCG4 LINC01015 HCG9 HLA-H TRIM40 MUC22 ZNF311 TRIM15 UBD HCG22 HLA-F-AS1 PSORS1C3 PPP1R10 OR5V1 HCG14 OR2H2 HCG27 PSORS1C2 DDR1 RNF39 HLA-F LOC105375014 TRIM31 HLA-G HLA-E TRIM26 OR2W1 LOC100129636 OR12D2 ABCF1 MAS1L RPP21 VARS2 IFITM4P DHX16 GNL1 ZFP57 CCHCR1 TUBB OR10C1 HCG8 C6orf15 MDC1 FLOT1 HCG17 ATAT1 LINC01556 PPP1R11 HLA-A PSORS1C1 MOG ZNRD1 OR12D3 NRM TRIM31-AS1 LOC554223 TRIM39-RPP21 HCG16 IER3 LINC00533 C6orf136 CDSN HLA-L MRPS18B LOC101929006 HCG20 MIR877 HCG18 LINC01623 OR11A1 HLA-J OR2J3 HCG4B ZNRD1ASP
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MDC1-AS1 POU5F1 PPP1R18 HLA-K TRIM10 TCF19 SFTA2 MUC21 GTF2H4 DPCR1 MIR4640 PRR3 LINC00243 TRIM39 HCG4 HCG9 HLA-H TRIM40 MUC22 TRIM15 HCG22 HLA-F-AS1 PSORS1C3 PPP1R10 HCG27 PSORS1C2 DDR1 RNF39 HLA-F LOC105375014 TRIM31 HLA-G HLA-E TRIM26 ABCF1 RPP21 VARS2 IFITM4P DHX16 GNL1 CCHCR1 TUBB HCG8 C6orf15 MDC1 FLOT1 HLA-C HCG17 ATAT1 PPP1R11 HLA-A PSORS1C1 ZNRD1 NRM TRIM31-AS1 LOC554223 TRIM39-RPP21 IER3 C6orf136 CDSN HLA-L MRPS18B HCG20 MIR877 HCG18 HLA-J HCG4B ZNRD1ASP
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion HCG27 PSORS1C2 DDR1 MDC1-AS1 LOC105375014 POU5F1 HLA-E PPP1R18 TCF19 ABCF1 VARS2 DHX16 GNL1 SFTA2 CCHCR1 MUC21 TUBB GTF2H4 C6orf15 MDC1 DPCR1 MIR4640 FLOT1 HLA-C ATAT1 PRR3 PSORS1C1 LINC00243 NRM IER3 C6orf136 CDSN MUC22 MRPS18B HCG20 MIR877 HCG22 PSORS1C3 PPP1R10
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MDC1-AS1 POU5F1 PPP1R18 HLA-K TRIM10 TCF19 SFTA2 MUC21 GTF2H4 DPCR1 MIR4640 PRR3 LINC00243 TRIM39 HCG9 HLA-H TRIM40 MUC22 TRIM15 HCG22 PSORS1C3 PPP1R10 HCG27 PSORS1C2 DDR1 RNF39 LOC105375014 TRIM31 HLA-E TRIM26 ABCF1 RPP21 VARS2 DHX16 GNL1 CCHCR1 TUBB HCG8 C6orf15 MDC1 FLOT1 HLA-C HCG17 ATAT1 PPP1R11 HLA-A PSORS1C1 ZNRD1 NRM TRIM31-AS1 TRIM39-RPP21 IER3 C6orf136 CDSN HLA-L MRPS18B HCG20 MIR877 HCG18 HLA-J HCG4B ZNRD1ASP
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion DDR1 MDC1-AS1 LOC105375014 PPP1R18 ABCF1 VARS2 DHX16 GNL1 SFTA2 MUC21 TUBB GTF2H4 MDC1 DPCR1 MIR4640 FLOT1 ATAT1 PRR3 LINC00243 NRM IER3 C6orf136 MUC22 MRPS18B HCG20 MIR877 HCG22 PPP1R10
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MDC1-AS1 HCG26 POU5F1 PPP1R18 TRIM10 TCF19 HCP5 SFTA2 MUC21 GTF2H4 LOC102725068 DPCR1 MIR4640 PRR3 LINC00243 TRIM39 TRIM40 MUC22 HLA-B TRIM15 HCG22 PSORS1C3 PPP1R10 HCG27 PSORS1C2 DDR1 RNF39 LOC105375014 TRIM31 HLA-E TRIM26 ABCF1 RPP21 VARS2 DHX16 GNL1 CCHCR1 TUBB HCG8 C6orf15 MDC1 FLOT1 HLA-C HCG17 ATAT1 PPP1R11 PSORS1C1 ZNRD1 NRM MICA TRIM31-AS1 MIR6891 TRIM39-RPP21 IER3 C6orf136 CDSN HLA-L MRPS18B HCG20 MIR877 HCG18 HLA-J ZNRD1ASP

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

translation elongation factor

Gene Ontology Categories:

Function(s) Process(es)


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