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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32183000 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01674927_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
EU826618.1
EU826619.1
FJ545655.1
GU139370.1
GU139371.1
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PPT2-EGFL8 PRRT1 ATF6B GPSM3 MIR6721 TNXB PBX2 FKBPL RNF5 PPT2 EGFL8 MIR6833 AGPAT1 NOTCH4 LOC100507547 AGER
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PPT2-EGFL8 PRRT1 CYP21A2 HLA-DQB2 ATF6B GPSM3 MIR6721 TNXB PBX2 HCG23 HLA-DRB5 HLA-DQA1 HLA-DQB1-AS1 PPT2 EGFL8 TNXA CYP21A1P C4B HLA-DRA LOC101929163 C6orf10 HLA-DQB1 C4A MIR3135B FKBPL HLA-DRB1 RNF5 HLA-DRB6 MIR6833 AGPAT1 NOTCH4 BTNL2 LOC100507547 AGER HLA-DQA2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss PPT2-EGFL8 PRRT1 C6orf48 ATF6B TNXB PBX2 HLA-DRB5 HLA-DQA1 HSPA1A CYP21A1P C4B MIR1236 HLA-DRA LOC101929163 HSPA1B C2 SKIV2L SNORD52 RNF5 HLA-DRB6 MIR6833 NOTCH4 SLC44A4 SNORD48 AGER C2-AS1 CYP21A2 GPSM3 MIR6721 HCG23 HLA-DQB1-AS1 PPT2 EGFL8 EHMT2 TNXA ZBTB12 NELFE C6orf10 HLA-DQB1 C4A NEU1 FKBPL HLA-DRB1 CFB STK19 AGPAT1 BTNL2 LOC100507547 DXO
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C2-AS1 PPT2-EGFL8 PRRT1 CYP21A2 ATF6B GPSM3 MIR6721 TNXB PBX2 PPT2 EGFL8 TNXA CYP21A1P C4B MIR1236 NELFE C4A C2 SKIV2L FKBPL RNF5 CFB STK19 MIR6833 AGPAT1 NOTCH4 LOC100507547 AGER DXO
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion PPT2-EGFL8 SNORA38 PRRT1 VWA7 PRRC2A C6orf48 SNORD84 ATF6B MIR4646 LSM2 BAG6 TNXB LY6G5B PBX2 DDX39B-AS1 SAPCD1 HLA-DRB5 AIF1 LTA HSPA1A NFKBIL1 MIR6832 CYP21A1P C4B LY6G6E DDX39B APOM MIR1236 HLA-DRA LOC101929163 GPANK1 HSPA1B C2 SKIV2L LTB C6orf47 SNORD52 HCG26 RNF5 C6orf25 HLA-DRB6 MIR6833 SAPCD1-AS1 NOTCH4 MSH5 MCCD1 CLIC1 SLC44A4 SNORD48 DDAH2 AGER C2-AS1 LOC100287329 CYP21A2 LOC102725068 HCP5 HSPA1L GPSM3 MIR6721 HCG23 VARS NCR3 PPT2 LST1 EGFL8 EHMT2 TNXA ZBTB12 MICB LY6G6F LY6G6C SNORD117 ATP6V1G2-DDX39B NELFE CSNK2B C6orf10 C4A NEU1 LY6G6D FKBPL HLA-DRB1 TNF CFB STK19 AGPAT1 MSH5-SAPCD1 BTNL2 LY6G5C ABHD16A LOC100507547 ATP6V1G2 DXO
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PPT2-EGFL8 SNORA38 PRRT1 VWA7 PRRC2A HLA-DPB1 C6orf48 MIR6834 LOC100294145 SNORD84 ATF6B MIR4646 BAG6 TNXB HLA-DQA1 AIF1 HLA-DPB2 PFDN6 HSPA1A NFKBIL1 CYP21A1P C4B TAP2 APOM MIR5004 LOC101929163 HCG24 SKIV2L SNORD52 ZBTB9 DAXX MIR6833 SYNGAP1 NOTCH4 MCCD1 CLIC1 SNORD48 DDAH2 AGER HLA-DQA2 C2-AS1 CYP21A2 HSPA1L HLA-DQB2 LST1 ZBTB12 HLA-DOA LY6G6F BRD2 LY6G6C SNORD117 RXRB MIR6873 TAPBP NEU1 LY6G6D PHF1 SLC39A7 HLA-DRB1 TNF CFB HSD17B8 STK19 RPS18 AGPAT1 RING1 HLA-DMB BTNL2 ABHD16A LOC100507547 MIR219A1 LSM2 KIFC1 HLA-DPA1 LY6G5B PBX2 DDX39B-AS1 SAPCD1 VPS52 CUTA HLA-DRB5 TAP1 PSMB8-AS1 LTA MIR6832 LY6G6E DDX39B MIR1236 HLA-DRA GPANK1 HSPA1B C2 PSMB9 HLA-DOB LTB C6orf47 HCG26 RNF5 C6orf25 ZBTB22 HLA-DRB6 SAPCD1-AS1 MSH5 SLC44A4 LOC100287329 LOC102725068 HCP5 RGL2 GPSM3 MIR6721 HCG23 VARS NCR3 PSMB8 HLA-DMA HLA-DQB1-AS1 PPT2 EGFL8 EHMT2 TNXA WDR46 MICB PPP1R2P1 ATP6V1G2-DDX39B B3GALT4 NELFE CSNK2B C6orf10 HLA-DQB1 C4A MIR3135B HCG25 FKBPL COL11A2 MSH5-SAPCD1 LY6G5C ATP6V1G2 DXO
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PPT2-EGFL8 PRRT1 ATF6B GPSM3 MIR6721 TNXB PBX2 FKBPL RNF5 PPT2 EGFL8 MIR6833 AGPAT1 NOTCH4 LOC100507547 AGER
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PPT2-EGFL8 SNORA38 PRRT1 VWA7 PRRC2A HLA-DPB1 C6orf48 MIR6834 LOC100294145 SNORD84 ATF6B MIR4646 BAG6 TNXB HLA-DQA1 AIF1 HLA-DPB2 PFDN6 HSPA1A NFKBIL1 CYP21A1P C4B TAP2 APOM MIR5004 LOC101929163 HCG24 SKIV2L SNORD52 ZBTB9 DAXX MIR6833 SYNGAP1 NOTCH4 MCCD1 CLIC1 SNORD48 DDAH2 AGER HLA-DQA2 C2-AS1 CYP21A2 HSPA1L HLA-DQB2 LST1 ZBTB12 HLA-DOA LY6G6F BRD2 LY6G6C SNORD117 RXRB MIR6873 TAPBP NEU1 LY6G6D PHF1 SLC39A7 HLA-DRB1 TNF CFB HSD17B8 STK19 RPS18 AGPAT1 RING1 HLA-DMB BTNL2 ABHD16A LOC100507547 MIR219A1 LSM2 KIFC1 HLA-DPA1 LY6G5B PBX2 DDX39B-AS1 SAPCD1 VPS52 CUTA HLA-DRB5 TAP1 PSMB8-AS1 LTA MIR6832 LY6G6E DDX39B MIR1236 HLA-DRA GPANK1 HSPA1B C2 PSMB9 HLA-DOB LTB C6orf47 HCG26 RNF5 C6orf25 ZBTB22 HLA-DRB6 SAPCD1-AS1 MSH5 SLC44A4 LOC100287329 LOC102725068 HCP5 RGL2 GPSM3 MIR6721 HCG23 VARS NCR3 PSMB8 HLA-DMA HLA-DQB1-AS1 PPT2 EGFL8 EHMT2 TNXA WDR46 MICB PPP1R2P1 ATP6V1G2-DDX39B B3GALT4 NELFE CSNK2B C6orf10 HLA-DQB1 C4A MIR3135B HCG25 FKBPL COL11A2 MSH5-SAPCD1 LY6G5C ATP6V1G2 DXO
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss PPT2-EGFL8 SNORA38 PRRT1 VWA7 PRRC2A C6orf48 SNORD84 ATF6B MIR4646 LSM2 BAG6 TNXB LY6G5B PBX2 DDX39B-AS1 SAPCD1 AIF1 LTA HSPA1A NFKBIL1 MIR6832 CYP21A1P C4B LY6G6E DDX39B APOM MIR1236 HLA-DRA LOC101929163 GPANK1 HSPA1B C2 SKIV2L LTB C6orf47 SNORD52 HCG26 RNF5 C6orf25 MIR6833 SAPCD1-AS1 NOTCH4 MSH5 MCCD1 CLIC1 SLC44A4 SNORD48 DDAH2 AGER C2-AS1 LOC100287329 CYP21A2 LOC102725068 MIR6891 MICA HCP5 HSPA1L GPSM3 MIR6721 HCG23 VARS NCR3 PPT2 LST1 EGFL8 EHMT2 TNXA ZBTB12 MICB LY6G6F LY6G6C HLA-B SNORD117 ATP6V1G2-DDX39B NELFE CSNK2B C6orf10 C4A NEU1 LY6G6D FKBPL TNF CFB STK19 AGPAT1 MSH5-SAPCD1 BTNL2 LY6G5C ABHD16A LOC100507547 ATP6V1G2 DXO

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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