Hs01679171_cn

• Gene Symbol: PTRF
• Assay Reference Genome Location: Chr.17:42404425 on build GRCh38
• Cytoband: 17q21.2

Target Gene Details

• Entrez Gene ID: 284119
• Gene Name: polymerase I and transcript release factor
• Gene Aliases: CAVIN, CAVIN1, CGL4, FKSG13, cavin-1
• Location: Chr.17:42402449-42423320 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PTRF	NM_012232.5	2	1658	NP_036364.2
	AF312393.1	2	1855	AAG27093.1
	AK000715.1	2	1144
	AK092406.1
	AK298072.1	3	1539
	AK298563.1	3	1513
	BC004295.1	1	868	AAH04295.1
	BC008849.1	2	941	AAH08849.1
	BC066123.1	2	1594	AAH66123.1
	BC073759.1	2	1480	AAH73759.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv470586	Chr.17:42362183 - 42459270 on Build GRCh38	Gain	PTRF STAT3 ATP6V0A1
nsv833449	Chr.17:42274854 - 42421081 on Build GRCh38	Loss	PTRF STAT3 STAT5B STAT5A
nsv575051	Chr.17:42317580 - 42498404 on Build GRCh38	Gain	PTRF STAT3 MIR548AT ATP6V0A1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription initiation from RNA polymerase I promoter
termination of RNA polymerase I transcription

Function(s)

protein binding
rRNA primary transcript binding
poly(A) RNA binding