Hs01686539_cn

• Gene Symbol: SPATC1L
• Assay Reference Genome Location: Chr.21:46161337 on build GRCh38
• Cytoband: 21q22.3

Target Gene Details

• Entrez Gene ID: 84221
• Gene Name: spermatogenesis and centriole associated 1-like
• Gene Aliases: C21orf56
• Location: Chr.21:46161148-46185159 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1L	NM_001142854.1	5	2127	NP_001136326.1
	NM_032261.4	4	976	NP_115637.3
	XM_005261188.4	5	1902	XP_005261245.1
	XM_011529756.2	3	804	XP_011528058.1
	XM_017028480.1	6	1849	XP_016883969.1
	AK304535.1	5	2127
	AL136871.1	4	904	CAB66805.1
	AW138006.1
	BC009497.2	3	861
	BC065570.1	3	828
	BC084577.1	4	948	AAH84577.1
	BC093804.1
	BC112293.1
	CR533451.1			CAG38482.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv587952	Chr.21:46128641 - 46162188 on Build GRCh38	Loss	SPATC1L COL6A2 FTCD
nsv1061087	Chr.21:46056174 - 46223305 on Build GRCh38	Loss	SPATC1L LSS COL6A2 FTCD
nsv509804	Chr.21:45879599 - 46235140 on Build GRCh38	Insertion	SPATC1L LSS COL6A2 LOC101928796 MCM3AP-AS1 MCM3AP FTCD COL6A1 PCBP3
nsv470910	Chr.21:45933861 - 46665076 on Build GRCh38	Gain	S100B YBEY LSS PRMT2 LOC101928796 MCM3AP-AS1 MCM3AP DIP2A PCBP3 SPATC1L PCNT DIP2A-IT1 C21orf58 COL6A2 FTCD COL6A1
nsv1060978	Chr.21:46068159 - 46413726 on Build GRCh38	Gain	SPATC1L PCNT YBEY LSS C21orf58 COL6A2 MCM3AP-AS1 MCM3AP FTCD
nsv470911	Chr.21:46115334 - 46171856 on Build GRCh38	Loss	SPATC1L COL6A2 FTCD
nsv525728	Chr.21:46052727 - 46163592 on Build GRCh38	Loss	SPATC1L COL6A2 FTCD

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function
protein binding