Hs01700513_cn

• Gene Symbol: MS4A6A
• Assay Reference Genome Location: Chr.11:60172236 on build GRCh38
• Cytoband: 11q12.2

Target Gene Details

• Entrez Gene ID: 64231
• Gene Name: membrane spanning 4-domains A6A
• Gene Aliases: 4SPAN3, 4SPAN3.2, CD20L3, CDA01, MS4A6, MST090, MSTP090
• Location: Chr.11:60171607-60184666 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
MS4A6A	NM_152851.2			NP_690590.1
	NM_152852.2			NP_690591.1
	XM_005274177.2			XP_005274234.1
	XM_006718658.2			XP_006718721.1
	XM_006718660.2			XP_006718723.1
	XM_017018123.1			XP_016873612.1
	XM_017018124.1	5	1471	XP_016873613.1
	AB013104.1			BAB18740.1
	AF212240.1			AAG41780.1
	AF237908.1			AAK37417.1
	AF253977.1			AAG44626.1
	AF261136.1			AAG44672.1
	AF286866.1			AAK37994.1
	AF350502.1			AAL56222.1
	AK291870.1
	AK301387.1	5	1371
	BC022854.1			AAH22854.1
	BC108728.1	6	1584	AAI08729.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv832174	Chr.11:60141794 - 60306435 on Build GRCh38	Gain	MS4A6A MIR6503 MS4A4A MS4A4E
nsv555150	Chr.11:60046814 - 60207927 on Build GRCh38	Gain	OOSP2 MS4A6A MS4A3 MS4A2 MS4A4E
nsv524137	Chr.11:60169506 - 60179779 on Build GRCh38	Loss	MS4A6A
esv33843	Chr.11:60140658 - 60177861 on Build GRCh38	Loss	MS4A6A
nsv832173	Chr.11:60021411 - 60173087 on Build GRCh38	Gain	LOC107987155 OOSP2 MS4A6A MS4A3 MS4A2

More Information

Additional Information:

For this assay, SNP(s) [rs150394214] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

transporter