Hs01716925_cn

• Gene Symbol: LYSMD1
• Assay Reference Genome Location: Chr.1:151165441 on build GRCh38
• Cytoband: 1q21.3

Target Gene Details

• Entrez Gene ID: 388695
• Gene Name: LysM domain containing 1
• Gene Aliases: SB145
• Location: Chr.1:151148496-151165948 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LYSMD1	NM_001136543.1			NP_001130015.1
	NM_212551.4	1	454	NP_997716.1
	AK298706.1
	BC031649.1	1	58	AAH31649.1
	BX647911.1	1	421	CAH10574.1
	DA176882.1

Target Gene Details

• Entrez Gene ID: 100534012
• Gene Name: TNFAIP8L2-SCNM1 readthrough
• Gene Aliases: -
• Location: Chr.1:151156629-151170297 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TNFAIP8L2-SCNM1	NM_001204848.1			NP_001191777.1
	BG531092.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522840	Chr.1:150961247 - 151375270 on Build GRCh38	Gain	TMOD4 TNFAIP8L2-SCNM1 LOC100507670 SELENBP1 CERS2 ANXA9 GABPB2 SCNM1 RFX5 PI4KB PSMD4 CDC42SE1 SEMA6C PRUNE1 MLLT11 GBAT2 VPS72 BNIPL SETDB1 FAM63A LYSMD1 C1orf56 PIP5K1A ZNF687 TNFAIP8L2
dgv2n68	Chr.1:151136983 - 151309302 on Build GRCh38	Loss	VPS72 TMOD4 SCNM1 TNFAIP8L2-SCNM1 PI4KB PSMD4 LYSMD1 SEMA6C PIP5K1A LOC100507670 ZNF687 TNFAIP8L2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s)

protein binding