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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32183345 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01720633_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 4 499 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 4 499 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1
XM_017010328.1 4 1424 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 4 409 AAX07274.1
AY755622.1 4 409 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
EU826617.1
EU826618.1
EU826619.1 4 399
FJ545655.1
GU139370.1 2 734
GU139371.1 2 734
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss ATF6B LOC100507547 FKBPL GPSM3 RNF5 PPT2-EGFL8 NOTCH4 AGER PBX2 AGPAT1 EGFL8 TNXB PPT2 MIR6833 PRRT1 MIR6721
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss ATF6B FKBPL CYP21A1P PPT2-EGFL8 TNXB PPT2 CYP21A2 HLA-DRB6 MIR6833 HLA-DQB1 C4B MIR6721 HCG23 HLA-DRB5 LOC100507547 HLA-DQB2 MIR3135B HLA-DQB1-AS1 TNXA GPSM3 RNF5 NOTCH4 HLA-DQA2 AGER PBX2 AGPAT1 EGFL8 LOC101929163 C6orf10 BTNL2 HLA-DRA C4A PRRT1 HLA-DRB1 HLA-DQA1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss ATF6B C6orf48 CYP21A1P SNORD48 SNORD52 TNXB PPT2 MIR6833 HLA-DQB1 C4B LOC100507547 MIR1236 SLC44A4 GPSM3 NOTCH4 AGER AGPAT1 LOC101929163 BTNL2 HLA-DRA HSPA1B PRRT1 HLA-DQA1 EHMT2 SKIV2L FKBPL NELFE PPT2-EGFL8 CFB C2-AS1 CYP21A2 HLA-DRB6 HSPA1A MIR6721 HCG23 HLA-DRB5 HLA-DQB1-AS1 TNXA STK19 RNF5 PBX2 EGFL8 NEU1 DXO C6orf10 ZBTB12 C4A HLA-DRB1 C2
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss ATF6B SKIV2L FKBPL NELFE CYP21A1P PPT2-EGFL8 CFB C2-AS1 TNXB PPT2 CYP21A2 MIR6833 C4B MIR6721 LOC100507547 MIR1236 TNXA GPSM3 STK19 RNF5 NOTCH4 AGER PBX2 AGPAT1 EGFL8 DXO C4A PRRT1 C2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion ATF6B C6orf48 MICB LOC100287329 CYP21A1P SNORD48 SNORD52 TNXB MIR6832 PPT2 MIR6833 DDX39B ATP6V1G2 C4B BAG6 LTB LOC100507547 MIR1236 LTA HCG26 SLC44A4 GPSM3 NOTCH4 ATP6V1G2-DDX39B AGER MSH5-SAPCD1 LY6G6F AGPAT1 LOC101929163 CSNK2B SNORD117 LY6G6C BTNL2 VARS LSM2 HLA-DRA HSPA1L SNORD84 NFKBIL1 HSPA1B PRRT1 GPANK1 EHMT2 MCCD1 SNORA38 SKIV2L FKBPL NELFE PPT2-EGFL8 VWA7 APOM LY6G5B NCR3 CFB SAPCD1 C2-AS1 HCP5 LST1 LY6G6E CYP21A2 HLA-DRB6 HSPA1A C6orf25 TNF MIR6721 ABHD16A MIR4646 HCG23 HLA-DRB5 MSH5 TNXA AIF1 STK19 RNF5 DDAH2 PBX2 PRRC2A EGFL8 NEU1 DXO C6orf10 ZBTB12 CLIC1 DDX39B-AS1 C6orf47 C4A SAPCD1-AS1 HLA-DRB1 LOC102725068 LY6G5C LY6G6D C2
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion ATF6B SYNGAP1 C6orf48 MICB LOC100287329 SNORD48 SNORD52 TNXB PPT2 MIR6833 DDX39B ATP6V1G2 C4B BAG6 LTB LOC100507547 MIR1236 HLA-DOB GPSM3 NOTCH4 ATP6V1G2-DDX39B AGER MSH5-SAPCD1 LY6G6F SNORD117 LY6G6C BTNL2 LSM2 HLA-DRA ZBTB9 HSPA1L HSPA1B ZBTB22 PRRT1 GPANK1 PSMB9 HLA-DQA1 EHMT2 TAP2 SNORA38 SKIV2L PSMB8-AS1 FKBPL NELFE PPT2-EGFL8 HLA-DPB1 LOC100294145 NCR3 HCP5 LST1 PSMB8 MIR5004 SLC39A7 C6orf25 HCG23 MSH5 HLA-DQB2 PPP1R2P1 HLA-DQB1-AS1 TNXA AIF1 STK19 RNF5 TAPBP HCG25 PBX2 NEU1 DXO C6orf10 C6orf47 MIR6834 LOC102725068 BRD2 HLA-DMB COL11A2 WDR46 CYP21A1P MIR6832 CUTA HLA-DQB1 DAXX RGL2 HLA-DMA MIR3135B LTA HCG26 SLC44A4 AGPAT1 LOC101929163 CSNK2B VARS SNORD84 NFKBIL1 MCCD1 PFDN6 VPS52 MIR6873 VWA7 APOM LY6G5B CFB SAPCD1 C2-AS1 LY6G6E CYP21A2 HSD17B8 PHF1 HLA-DRB6 HSPA1A HLA-DPB2 KIFC1 TNF HCG24 MIR6721 ABHD16A HLA-DOA MIR4646 B3GALT4 HLA-DRB5 RING1 HLA-DPA1 RPS18 HLA-DQA2 DDAH2 PRRC2A TAP1 EGFL8 ZBTB12 MIR219A1 CLIC1 DDX39B-AS1 C4A SAPCD1-AS1 HLA-DRB1 RXRB LY6G5C LY6G6D C2
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss ATF6B LOC100507547 FKBPL GPSM3 RNF5 PPT2-EGFL8 NOTCH4 AGER PBX2 AGPAT1 EGFL8 TNXB PPT2 MIR6833 PRRT1 MIR6721
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion ATF6B SYNGAP1 C6orf48 MICB LOC100287329 SNORD48 SNORD52 TNXB PPT2 MIR6833 DDX39B ATP6V1G2 C4B BAG6 LTB LOC100507547 MIR1236 HLA-DOB GPSM3 NOTCH4 ATP6V1G2-DDX39B AGER MSH5-SAPCD1 LY6G6F SNORD117 LY6G6C BTNL2 LSM2 HLA-DRA ZBTB9 HSPA1L HSPA1B ZBTB22 PRRT1 GPANK1 PSMB9 HLA-DQA1 EHMT2 TAP2 SNORA38 SKIV2L PSMB8-AS1 FKBPL NELFE PPT2-EGFL8 HLA-DPB1 LOC100294145 NCR3 HCP5 LST1 PSMB8 MIR5004 SLC39A7 C6orf25 HCG23 MSH5 HLA-DQB2 PPP1R2P1 HLA-DQB1-AS1 TNXA AIF1 STK19 RNF5 TAPBP HCG25 PBX2 NEU1 DXO C6orf10 C6orf47 MIR6834 LOC102725068 BRD2 HLA-DMB COL11A2 WDR46 CYP21A1P MIR6832 CUTA HLA-DQB1 DAXX RGL2 HLA-DMA MIR3135B LTA HCG26 SLC44A4 AGPAT1 LOC101929163 CSNK2B VARS SNORD84 NFKBIL1 MCCD1 PFDN6 VPS52 MIR6873 VWA7 APOM LY6G5B CFB SAPCD1 C2-AS1 LY6G6E CYP21A2 HSD17B8 PHF1 HLA-DRB6 HSPA1A HLA-DPB2 KIFC1 TNF HCG24 MIR6721 ABHD16A HLA-DOA MIR4646 B3GALT4 HLA-DRB5 RING1 HLA-DPA1 RPS18 HLA-DQA2 DDAH2 PRRC2A TAP1 EGFL8 ZBTB12 MIR219A1 CLIC1 DDX39B-AS1 C4A SAPCD1-AS1 HLA-DRB1 RXRB LY6G5C LY6G6D C2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss ATF6B C6orf48 MICB LOC100287329 CYP21A1P SNORD48 SNORD52 MIR6891 HLA-B TNXB MIR6832 PPT2 MIR6833 DDX39B ATP6V1G2 C4B BAG6 LTB LOC100507547 MIR1236 LTA HCG26 SLC44A4 GPSM3 NOTCH4 ATP6V1G2-DDX39B AGER MSH5-SAPCD1 LY6G6F AGPAT1 LOC101929163 CSNK2B SNORD117 LY6G6C BTNL2 VARS LSM2 HLA-DRA HSPA1L SNORD84 NFKBIL1 HSPA1B PRRT1 GPANK1 EHMT2 MCCD1 MICA SNORA38 SKIV2L FKBPL NELFE PPT2-EGFL8 VWA7 APOM LY6G5B NCR3 CFB SAPCD1 C2-AS1 HCP5 LST1 LY6G6E CYP21A2 HSPA1A C6orf25 TNF MIR6721 ABHD16A MIR4646 HCG23 MSH5 TNXA AIF1 STK19 RNF5 DDAH2 PBX2 PRRC2A EGFL8 NEU1 DXO C6orf10 ZBTB12 CLIC1 DDX39B-AS1 C6orf47 C4A SAPCD1-AS1 LOC102725068 LY6G5C LY6G6D C2

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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