Hs01750032_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88677784 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3	3	1611	NP_840101.1
	BC041461.1	3	1518	AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	BX640980.1	6	2890

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	PIEZO1 SNAI3-AS1 CTU2 LOC339059 MVD MIR4722 SNAI3 CYBA LOC100289580 RNF166
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	PIEZO1 SNAI3-AS1 CTU2 MVD MIR4722 SNAI3 LOC100289580 RNF166
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	PIEZO1 SNAI3-AS1 CTU2 LOC339059 MIR4722 SNAI3 LOC100289580 RNF166
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	SNAI3-AS1 IL17C MVD SNAI3 CYBA ZC3H18-AS1 ZC3H18 RNF166
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	CTU2 MVD MIR4722 LOC107984862 CYBA LOC100289580 ZC3H18 RNF166 ZNF469 ZFPM1 PIEZO1 SNAI3-AS1 IL17C LOC339059 SNAI3 MIR5189 ZC3H18-AS1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	TUBB8P7 LOC400558 CTU2 MVD ACSF3 DBNDD1 ZNF276 SNORD68 PIEZO1 IL17C LOC101927793 SNAI3 DEF8 RPL13 CDT1 GALNS CDH15 LOC105371414 SPIRE2 LOC101927817 LOC107984817 LOC100287036 PRDM7 LINC00304 CENPBD1 LOC339059 SPATA33 PABPN1L ANKRD11 SPATA2L ZNF778 APRT LOC105371409 FANCA DPEP1 MIR4722 CPNE7 TCF25 LOC100129697 SLC22A31 LOC107987238 SNAI3-AS1 GAS8 VPS9D1-AS1 CBFA2T3 CDK10 TRAPPC2L MC1R GAS8-AS1 SPG7 CYBA LOC100289580 TUBB3 RNF166 LOC105371419 CHMP1A AFG3L1P FAM157C URAHP VPS9D1
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding