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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49932892 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01770997_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 3 1026 NP_001180575.1
NM_001290746.1 3 997 NP_001277675.1
NM_012068.5 4 1231 NP_036200.2
XM_011526629.2 3 933 XP_011524931.1
AB021663.2 3 968 BAA78477.2
AB073613.1 3 964 BAD38650.1
AF305687.1 2 699 AAG22558.1
AK024402.1 3 968
AK091985.1
AK290592.1 4 1170
BC005174.2 3 955 AAH05174.1
BM462249.1 3 867

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss CGB2 SNAR-A4 LOC100287477 AP2A1 MIR4324 CARD8-AS1 LOC105447645 SNAR-B2 FUT2 SNAR-A2 PLEKHA4 TRPM4 IL4I1 SNAR-A6 AKT1S1 SLC17A7 GRWD1 TSKS SEC1P SIGLEC11 PTOV1-AS1 PRR12 NUCB1 SNAR-A1 ALDH16A1 MAMSTR BCL2L12 SPACA4 RASIP1 RPL18 ADM5 CGB5 RRAS SNAR-B1 SNAR-C1 LIN7B CYTH2 C19orf68 SNORD34 SNAR-A10 FCGRT EMP3 PPFIA3 PLA2G4C TEAD2 MIR6800 SNAR-D NOSIP DHDH PPP1R15A SPHK2 CD37 FAM83E IZUMO1 HSD17B14 PLA2G4C-AS1 LIG1 PIH1D1 GRIN2D MED25 FUZ SNAR-C4 SNORD35B TBC1D17 CGB7 FTL CGB1 NUCB1-AS1 SNAR-A12 LOC105372430 CGB3 KCNA7 RUVBL2 SNAR-A9 PRRG2 RPS11 CABP5 SNAR-G1 C19orf73 RCN3 TMEM143 SNORD33 BAX CCDC155 PTH2 GFY SNAR-C2 SNAR-A8 CCDC114 FUT1 CA11 SNORD35A SNAR-C5 SNORD32A PNKP BCAT2 KCNJ14 VRK3 ZNF114 SNRNP70 SNAR-A11 SNAR-G2 MIR150 SNAR-C3 FGF21 BSPH1 KDELR1 RPL13A CARD8 SNAR-A13 CGB8 FLJ26850 CPT1C SYNGR4 LOC101928295 NTN5 FLT3LG HRC MIR5088 DKKL1 MIR4750 NUP62 IRF3 TULP2 NTF4 LMTK3 MIR4751 SNAR-A7 PTOV1 ATF5 SULT2B1 ELSPBP1 DBP MIR6798 SCAF1 PTOV1-AS2 MIR4749 SNAR-A14 SNAR-A5 MIR6799 SIGLEC16 GYS1 SLC6A16 ZNF473 SNAR-A3 LOC101059948 PRMT1 LHB
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain VRK3 IL4I1 SIGLEC11 SIGLEC16 ATF5 NUP62 MIR4751
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss MED25 TSKS FUZ PTOV1 TBC1D17 ATF5 AP2A1 PTOV1-AS1 MIR6800 PTOV1-AS2 MIR4749 IL4I1 MIR6799 MIR4750 AKT1S1 PNKP NUP62 MIR4751
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion CPT1C AP2A1 MIR6800 NOSIP MIR5088 IL4I1 MIR4750 AKT1S1 PNKP NUP62 IRF3 MIR4751 MED25 TSKS FUZ PTOV1 TBC1D17 ATF5 PTOV1-AS1 PRR12 BCL2L12 SCAF1 PTOV1-AS2 MIR4749 ADM5 MIR6799 RRAS PRRG2 PRMT1
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain IL4I1 SIGLEC11 ATF5 NUP62 MIR4751
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain VRK3 IL4I1 MIR4750 SIGLEC11 AKT1S1 SIGLEC16 TBC1D17 ZNF473 ATF5 NUP62 MIR4751
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss VRK3 SIGLEC11 PTOV1 TBC1D17 ATF5 PTOV1-AS1 PTOV1-AS2 MIR4749 IL4I1 MIR4750 AKT1S1 SIGLEC16 PNKP NUP62 MIR4751
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain IL4I1 SIGLEC11 ATF5 NUP62 MIR4751
nsv579911 Chr.19:49930731 - 49969159 on Build GRCh38 Gain SIGLEC11 ATF5 MIR4751

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