Hs01793331_cn

• Gene Symbol: GPC2
• Assay Reference Genome Location: Chr.7:100177271 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 221914
• Gene Name: glypican 2
• Gene Aliases: -
• Location: Chr.7:100169606-100177426 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GPC2	NM_152742.2	1	156	NP_689955.1
	AK096281.1	1	94	BAC04745.1
	AL834418.1			CAD39080.1
	AY093588.1	1	103
	BC027972.1	1	97	AAH27972.1
	HY045249.1	1	157

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv5867	Chr.7:100169151 - 100202132 on Build GRCh38	Deletion	GPC2 STAG3 GATS
nsv607931	Chr.7:100067194 - 100198523 on Build GRCh38	Loss	GPC2 MIR93 MCM7 STAG3 AP4M1 MBLAC1 LAMTOR4 GATS C7orf43 ZNF3 MIR106B TAF6 MIR25 CNPY4 COPS6 MIR4658 GAL3ST4
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	MIR6875 SPDYE3 TSC22D4 CLDN15 STAG3 ZCWPW1 LAMTOR4 GATS AZGP1P1 MIR106B AP1S1 STAG3L5P-PVRIG2P-PILRB PILRB ZSCAN21 LOC102724094 SAP25 CNPY4 UFSP1 VGF MIR6840 GPC2 ZKSCAN1 GNB2 MBLAC1 ZNF3 ZNHIT1 FIS1 AZGP1 ZASP ZAN MOSPD3 COPS6 MUC17 PILRA MIR4658 GAL3ST4 ACHE PLOD3 MCM7 SLC12A9 AGFG2 LOC105375429 SRRT AP4M1 NAT16 PMS2P1 NYAP1 SERPINE1 C7orf43 STAG3L5P GIGYF1 EPHB4 PVRIG MUC3A FBXO24 LRCH4 POP7 MIR93 TFR2 TRIM56 C7orf61 PVRIG2P MEPCE PCOLCE-AS1 TRIP6 ACTL6B MOGAT3 TAF6 PCOLCE MIR25 MUC12 PPP1R35 EPO MIR4653
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	MIR6840 GPC2 SPDYE3 STAG3 PVRIG2P LAMTOR4 PMS2P1 GATS C7orf43 STAG3L5P STAG3L5P-PVRIG2P-PILRB PILRB PVRIG MIR4658 GAL3ST4

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

retinoid metabolic process
glycosaminoglycan biosynthetic process
glycosaminoglycan catabolic process
smoothened signaling pathway
neuron differentiation
glycosaminoglycan metabolic process

Function(s)

heparan sulfate proteoglycan binding