Name: [Hs01794201_cn] [CSGALNACT1]
Creator: Thermo Fisher Scientific
Keywords: [CSGALNACT1] Assay, [chondroitin sulfate N-acetylgalactosaminyltransferase 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	55790
Gene Name:	chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene Aliases:	CSGalNAcT-1, ChGn, beta4GalNAcT
Location:	Chr.8:19404161-19757940 on Build GRCh38
Assay Gene Location:	Overlaps Intron 28 - Exon 28

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CSGALNACT1	NM_001130518.1			NP_001123990.1
	NM_018371.4			NP_060841.5
	NR_024040.1
	XM_006716358.2			XP_006716421.1
	XM_006716359.2			XP_006716422.1
	XM_006716360.2			XP_006716423.1
	XM_006716361.2			XP_006716424.1
	XM_006716362.2			XP_006716425.1
	XM_006716363.1			XP_006716426.1
	XM_006716364.3			XP_006716427.1
	XM_011544578.1			XP_011542880.1
	XM_011544579.1			XP_011542881.1
	XM_011544580.1			XP_011542882.1
	XM_011544582.1			XP_011542884.1
	XM_011544583.1			XP_011542885.1
	XM_011544584.1			XP_011542886.1
	XM_011544585.2			XP_011542887.1
	XM_017013623.1			XP_016869112.1
	XM_017013624.1			XP_016869113.1
	XM_017013625.1			XP_016869114.1
	XM_017013626.1			XP_016869115.1
	XM_017013627.1			XP_016869116.1
	XM_017013628.1			XP_016869117.1
	XM_017013629.1			XP_016869118.1
	XM_017013630.1			XP_016869119.1
	XM_017013631.1			XP_016869120.1
	XM_017013632.1			XP_016869121.1
	XM_017013633.1			XP_016869122.1
	XM_017013634.1			XP_016869123.1
	XM_017013635.1			XP_016869124.1
	XM_017013636.1			XP_016869125.1
	XM_017013637.1			XP_016869126.1
	XM_017013638.1			XP_016869127.1
	XM_017013639.1			XP_016869128.1
	AB071403.1			BAB85992.1
	AB081516.1			BAC16217.1
	AK002126.1			BAA92093.1
	AK023822.1	1	1430
	AK314625.1
	AL157483.1			CAB75673.1
	AY358441.1			AAQ88806.1
	BX649103.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3616532	Chr.8:18974801 - 19484110 on Build GRCh38	Gain	CSGALNACT1 LOC100128993 PSD3 SH2D4A
nsv610752	Chr.8:19397305 - 19453985 on Build GRCh38	Loss	CSGALNACT1
nsv610751	Chr.8:19368824 - 19427378 on Build GRCh38	Loss	CSGALNACT1 SH2D4A
nsv1022344	Chr.8:19412632 - 19466572 on Build GRCh38	Loss	CSGALNACT1
esv34007	Chr.8:19395091 - 19624587 on Build GRCh38	Loss	CSGALNACT1 SH2D4A
nsv522185	Chr.8:19097292 - 20497802 on Build GRCh38	Gain	LZTS1-AS1 CSGALNACT1 ATP6V1B2 LOC100128993 LZTS1 SLC18A1 INTS10 LPL SH2D4A
nsv1016482	Chr.8:18977297 - 19481976 on Build GRCh38	Gain	CSGALNACT1 LOC100128993 PSD3 SH2D4A