Hs01821396_cn

• Gene Symbol: NELFB
• Assay Reference Genome Location: Chr.9:137255556 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 25920
• Gene Name: negative elongation factor complex member B
• Gene Aliases: COBRA1, NELF-B
• Location: Chr.9:137255300-137273548 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NELFB	NM_015456.4	1	257	NP_056271.3
	AF464935.1	1	62	AAL69965.1
	AK091056.1	1	250
	DA210427.1	1	250

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	STPG3 ANAPC2 EXD3 RNF224 SSNA1 NELFB TOR4A RNF208 TPRN CYSRT1 NDOR1 TUBB4B FAM166A C9orf173-AS1 SLC34A3 TMEM203 NRARP
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	STPG3 EXD3 TUBB4B RNF224 FAM166A C9orf173-AS1 SLC34A3 NELFB TOR4A NRARP CYSRT1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	EXD3 ABCA2 NSMF MIR3621 TOR4A TPRN CYSRT1 UAP1L1 FAM166A C9orf172 LRRC26 FUT7 CCDC183-AS1 SSNA1 MIR7114 C9orf142 LCN12 DPP7 ENTPD8 TMEM210 LCNL1 PNPLA7 GRIN1 MAMDC4 NRARP SAPCD2 CCDC183 STPG3 MIR4479 PRR31 TRAF2 RABL6 NDOR1 EDF1 TUBB4B LOC101930307 SLC34A3 C9orf139 ANAPC2 FBXW5 MAN1B1-AS1 RNF224 PHPT1 NELFB RNF208 NOXA1 PTGDS ENTPD2 CLIC3 C9orf173-AS1 MIR4292 NPDC1 MAN1B1 TMEM203 C8G
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	STPG3 ANAPC2 EXD3 RNF224 SSNA1 MIR3621 NELFB TOR4A RNF208 TPRN CYSRT1 NDOR1 TUBB4B TMEM210 FAM166A C9orf173-AS1 SLC34A3 LRRC26 GRIN1 TMEM203 NRARP
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	STPG3 ANAPC2 EXD3 RNF224 SSNA1 MIR3621 NELFB TOR4A RNF208 TPRN CYSRT1 NDOR1 NOXA1 TUBB4B ENTPD8 TMEM210 FAM166A C9orf173-AS1 SLC34A3 LRRC26 GRIN1 TMEM203 NRARP
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	EXD3 ABCA2 MIR3621 TOR4A MIR6722 TPRN CYSRT1 UAP1L1 TMEM141 FAM166A C9orf172 LCN8 LRRC26 SNHG7 FUT7 HSPC324 CCDC183-AS1 AGPAT2 SSNA1 MIR126 FAM69B C9orf142 LCN12 DPP7 LOC100128593 TMEM210 LCNL1 EGFL7 GRIN1 MAMDC4 NRARP LCN10 SAPCD2 CCDC183 STPG3 MIR4479 PRR31 TRAF2 RABL6 LCN15 NDOR1 EDF1 TUBB4B LOC101930307 SLC34A3 C9orf139 ANAPC2 FBXW5 MAN1B1-AS1 RNF224 SNORA17B PHPT1 NELFB RNF208 SNORA17A LCN6 PTGDS ENTPD2 CLIC3 LINC01451 C9orf173-AS1 MIR4292 NPDC1 MAN1B1 TMEM203 C8G

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation from RNA polymerase II promoter
positive regulation of viral transcription

Function(s)

protein binding