Hs01849811_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88686370 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	AY203928.1	1	1238	AAP34451.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC100289580 PIEZO1 RNF166 SNAI3-AS1 CTU2 LOC339059 CYBA SNAI3 MIR4722 MVD
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC100289580 APRT PIEZO1 RNF166 SNAI3-AS1 CDT1 CTU2 LOC339059 GALNS LOC107987238 SNAI3 MIR4722
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	LOC100289580 PIEZO1 RNF166 SNAI3-AS1 CTU2 SNAI3 MIR4722 MVD
nsv819380	Chr.16:88685834 - 88687028 on Build GRCh38	Gain	SNAI3-AS1 SNAI3
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC100289580 PIEZO1 RNF166 SNAI3-AS1 CTU2 LOC339059 SNAI3 MIR4722
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18 RNF166 SNAI3-AS1 IL17C CYBA SNAI3 MVD ZC3H18-AS1
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	LOC107984862 ZC3H18 RNF166 SNAI3-AS1 IL17C CYBA MIR5189 ZFPM1 ZC3H18-AS1 LOC100289580 PIEZO1 CTU2 LOC339059 SNAI3 MIR4722 MVD ZNF469
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	GAS8 GALNS URAHP CBFA2T3 ZNF276 APRT ZNF778 CTU2 LOC105371414 TUBB3 LOC100129697 TRAPPC2L SPG7 SNAI3-AS1 CPNE7 SLC22A31 MC1R SNORD68 LOC105371419 ACSF3 VPS9D1 SPATA2L CDH15 LOC101927817 TCF25 CDT1 RPL13 CHMP1A MIR4722 SPIRE2 VPS9D1-AS1 LOC107984817 LINC00304 PRDM7 RNF166 FANCA DEF8 LOC107987238 PABPN1L CDK10 FAM157C SPATA33 LOC339059 LOC400558 SNAI3 MVD LOC100287036 LOC101927793 AFG3L1P IL17C CYBA CENPBD1 TUBB8P7 DBNDD1 DPEP1 LOC100289580 PIEZO1 GAS8-AS1 ANKRD11 LOC105371409
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding