Hs01879842_cn

• Gene Symbol: GATS
• Assay Reference Genome Location: Chr.7:100205307 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 352954
• Gene Name: GATS, stromal antigen 3 opposite strand
• Gene Aliases: STAG3OS
• Location: Chr.7:100187988-100272274 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATS	NM_178831.6			NP_849153.3
	NR_028039.1
	NR_028040.1
	XM_017012154.1			XP_016867643.1
	XM_017012155.1			XP_016867644.1
	XM_017012156.1			XP_016867645.1
	XM_017012157.1			XP_016867646.1
	AK056608.1
	AK095056.1
	AK124689.1
	AK290510.1
	BC033723.1			AAH33723.1
	BC065200.1			AAH65200.1
	BC090867.1			AAH90867.1
	CR749506.1			CAH18327.1
	DA737015.1

Target Gene Details

• Entrez Gene ID: 10734
• Gene Name: stromal antigen 3
• Gene Aliases: -
• Location: Chr.7:100177563-100219334 on Build GRCh38
• Assay Gene Location: Within Exon 29

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STAG3	NM_001282716.1	29	3407	NP_001269645.1
	NM_001282717.1	29	3488	NP_001269646.1
	NM_001282718.1	27	3281	NP_001269647.1
	NM_012447.3	29	3488	NP_036579.2
	XM_011515742.1	29	3455	XP_011514044.1
	XM_017011683.1	29	3335	XP_016867172.1
	XM_017011684.1	29	3455	XP_016867173.1
	XM_017011685.1	29	3568	XP_016867174.1
	XM_017011686.1	29	3335	XP_016867175.1
	XM_017011687.1	27	3161	XP_016867176.1
	AJ007798.2	29	3408	CAB59367.1
	AK292394.1	29	3315
	AK302587.1	26	2899
	AK302693.1	27	3104
	AL833816.1			CAD38679.2
	BC140932.1	29	3247
	BC146806.1	29	3313

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	STAG3 LOC102724094 GATS PMS2P1 GNB2 SLC12A9 AGFG2 SERPINE1 MIR4658 MCM7 PVRIG2P MIR6875 EPO AZGP1 LAMTOR4 PLOD3 GAL3ST4 CLDN15 ZASP MIR6840 MIR4653 AP1S1 PCOLCE-AS1 ZKSCAN1 TAF6 MIR25 GPC2 ACHE PPP1R35 CNPY4 TSC22D4 MOGAT3 FBXO24 PVRIG ZSCAN21 TRIM56 ZCWPW1 TRIP6 C7orf43 MUC12 MIR93 SRRT ACTL6B STAG3L5P VGF UFSP1 AZGP1P1 PILRB ZAN ZNHIT1 COPS6 GIGYF1 LRCH4 FIS1 POP7 SPDYE3 NYAP1 MUC17 ZNF3 EPHB4 AP4M1 MBLAC1 NAT16 PCOLCE STAG3L5P-PVRIG2P-PILRB SAP25 C7orf61 MUC3A MEPCE LOC105375429 MOSPD3 MIR106B PILRA TFR2
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	STAG3 GATS PMS2P1 MIR4658 PILRB PVRIG2P PVRIG STAG3L5P-PVRIG2P-PILRB LAMTOR4 GAL3ST4 MIR6840 SPDYE3 C7orf43 GPC2 STAG3L5P
nsv8182	Chr.7:100202193 - 100282158 on Build GRCh38	Gain	STAG3 GATS PVRIG

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

synaptonemal complex assembly