Hs01880694_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137251898 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Overlaps Exon 3 - Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3			NP_001004353.2
	NM_001256699.1			NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1
	NR_046340.1
	XM_006717113.2			XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1			BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1
	BC144308.2
	BC144311.1
	BC144314.1
	DB453255.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	FAM166A TOR4A CYSRT1 NELFB SSNA1 STPG3 TPRN RNF224 C9orf173-AS1 RNF208 NDOR1 SLC34A3 EXD3 TUBB4B ANAPC2 TMEM203 NRARP
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	RNF224 C9orf173-AS1 FAM166A TOR4A CYSRT1 NELFB SLC34A3 EXD3 TUBB4B STPG3 NRARP
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TMEM210 FAM166A C8G TOR4A CCDC183-AS1 MAMDC4 MAN1B1-AS1 STPG3 PNPLA7 RNF224 NSMF C9orf173-AS1 RNF208 NDOR1 PTGDS FBXW5 LCN12 CCDC183 NRARP UAP1L1 CYSRT1 PRR31 NELFB SSNA1 LOC101930307 TRAF2 TPRN PHPT1 SAPCD2 ENTPD2 EXD3 ANAPC2 EDF1 TMEM203 C9orf142 ABCA2 C9orf139 FUT7 LCNL1 CLIC3 LRRC26 NPDC1 SLC34A3 MIR3621 MIR4479 GRIN1 MIR4292 NOXA1 MAN1B1 MIR7114 TUBB4B C9orf172 ENTPD8 DPP7 RABL6
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	TMEM210 FAM166A TOR4A CYSRT1 NELFB SSNA1 GRIN1 STPG3 TPRN RNF224 C9orf173-AS1 RNF208 LRRC26 NDOR1 SLC34A3 EXD3 TUBB4B ANAPC2 MIR3621 TMEM203 NRARP
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	TMEM210 FAM166A TOR4A CYSRT1 NELFB SSNA1 GRIN1 NOXA1 STPG3 TPRN RNF224 C9orf173-AS1 RNF208 LRRC26 NDOR1 SLC34A3 EXD3 TUBB4B ANAPC2 ENTPD8 MIR3621 TMEM203 NRARP
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TMEM210 FAM166A C8G TOR4A CCDC183-AS1 LCN8 MAMDC4 SNHG7 MAN1B1-AS1 STPG3 LCN15 SNORA17B RNF224 C9orf173-AS1 RNF208 FAM69B LOC100128593 NDOR1 PTGDS FBXW5 LCN12 CCDC183 NRARP UAP1L1 TMEM141 CYSRT1 PRR31 NELFB SSNA1 LINC01451 LOC101930307 TRAF2 TPRN PHPT1 SAPCD2 ENTPD2 EXD3 ANAPC2 EDF1 SNORA17A TMEM203 C9orf142 ABCA2 C9orf139 FUT7 LCNL1 CLIC3 LRRC26 HSPC324 NPDC1 SLC34A3 MIR3621 LCN6 MIR6722 MIR4479 GRIN1 MIR4292 MIR126 LCN10 MAN1B1 AGPAT2 EGFL7 TUBB4B C9orf172 DPP7 RABL6

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein