Genomic Map
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Target Gene Details
Entrez Gene ID: | 123872 |
Gene Name: | dynein axonemal assembly factor 1 |
Gene Aliases: |
CILD13, LRRC50, ODA7 |
Location: |
Chr.16:84145260-84178761 on Build GRCh38 |
Assay Gene Location: | Within Exon 15 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| DNAAF1 | XM_006721129.2 | 12 | 3126 | XP_006721192.1 |
| XM_011522854.2 | 12 | 3174 | XP_011521156.1 |
Target Gene Details
Entrez Gene ID: | 9013 |
Gene Name: | TATA-box binding protein associated factor, RNA polymerase I subunit C |
Gene Aliases: |
MGC:39976, SL1, TAFI110, TAFI95 |
Location: |
Chr.16:84177847-84187070 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TAF1C | NM_001243156.1 | 15 | 3113 | NP_001230085.1 |
| NM_001243157.1 | 12 | 2747 | NP_001230086.1 | |
| NM_001243158.1 | 11 | 2608 | NP_001230087.1 | |
| NM_001243159.1 | 14 | 3080 | NP_001230088.1 | |
| NM_001243160.1 | 12 | 2925 | NP_001230089.1 | |
| NM_005679.3 | 14 | 3191 | NP_005670.3 | |
| NM_139353.2 | 15 | 2949 | NP_647610.2 | |
| XM_005256226.3 | 14 | 3114 | XP_005256283.1 | |
| XM_005256227.3 | 14 | 3025 | XP_005256284.1 | |
| XM_006721325.3 | 15 | 3206 | XP_006721388.1 | |
| XM_006721326.3 | 16 | 3128 | XP_006721389.1 | |
| XM_017023845.1 | 15 | 3036 | XP_016879334.1 | |
| XM_017023846.1 | 13 | 2975 | XP_016879335.1 | |
| XM_017023847.1 | 15 | 2947 | XP_016879336.1 | |
| XM_017023848.1 | 9 | 2798 | XP_016879337.1 | |
| AB209594.1 | 13 | 3889 | BAD92831.1 | |
| AK304261.1 | 14 | 3062 | ||
| BC028131.1 | 15 | 2928 | AAH28131.1 | |
| L39059.1 | 14 | 3133 | AAA62861.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| esv3639413 | Chr.16:84172318 - 84253359 on Build GRCh38 | Loss |
 ADAD2
DNAAF1
KCNG4
TAF1C
|
| nsv833309 | Chr.16:84076867 - 84248591 on Build GRCh38 | Loss |
ADAD2
DNAAF1
HSDL1
MBTPS1
KCNG4
TAF1C
LOC729887
|
| nsv1065790 | Chr.16:83830329 - 84243597 on Build GRCh38 | Loss |
ADAD2
DNAAF1
HSDL1
MLYCD
LOC105371371
MBTPS1
KCNG4
NECAB2
SLC38A8
OSGIN1
TAF1C
LOC729887
|
| esv2761930 | Chr.16:84007420 - 84312461 on Build GRCh38 | Gain |
ADAD2
DNAAF1
HSDL1
MBTPS1
KCNG4
LOC105376777
SLC38A8
WFDC1
TAF1C
LOC729887
|
| nsv518331 | Chr.16:84176132 - 84179104 on Build GRCh38 | Loss |
DNAAF1
TAF1C
|
| esv3639414 | Chr.16:84176251 - 84352273 on Build GRCh38 | Loss |
ADAD2
DNAAF1
KCNG4
LOC105376777
WFDC1
TAF1C
|
| esv3639412 | Chr.16:84170074 - 84221406 on Build GRCh38 | Loss |
ADAD2
DNAAF1
KCNG4
TAF1C
|
| nsv573422 | Chr.16:84178502 - 84180359 on Build GRCh38 | Loss |
DNAAF1
TAF1C
|
| nsv483044 | Chr.16:84166395 - 87066394 on Build GRCh38 | Gain |
ADAD2
FLJ30679
DNAAF1
USP10
CRISPLD2
C16orf74
GSE1
LOC101928557
FENDRR
MTHFSD
KIAA0513
LINC00311
GINS2
TAF1C
FOXF1
LOC101928474
ZDHHC7
LINC01081
COTL1
KLHL36
ATP2C2
LOC105376777
LINC00917
LOC146513
LINC01082
TLDC1
LOC105371374
FOXL1
FOXC2-AS1
IRF8
MIR1910
FAM92B
LOC400548
LOC102724344
EMC8
FOXC2
MIR6774
LOC101928614
LOC440390
KCNG4
COX4I1
MIR5093
WFDC1
|
| nsv1059227 | Chr.16:84029323 - 84233403 on Build GRCh38 | Loss |
ADAD2
DNAAF1
HSDL1
MBTPS1
KCNG4
SLC38A8
TAF1C
LOC729887
|
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Additional Information:
For this assay, SNP(s) [rs115942235] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
protein-binding activity modulator
phosphatase modulator
DNA-directed RNA polymerase
Gene Ontology Categories:
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