Hs01951032_cn

• Gene Symbol: EFNA3
• Assay Reference Genome Location: Chr.1:155085391 on build GRCh38
• Cytoband: 1q21.3

Target Gene Details

• Entrez Gene ID: 1944
• Gene Name: ephrin A3
• Gene Aliases: EFL2, EPLG3, Ehk1-L, LERK3
• Location: Chr.1:155078872-155087538 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
EFNA3	NM_004952.4			NP_004943.1
	AK296030.1
	AK316248.1
	BC017722.1			AAH17722.1
	BC110406.1
	L37360.1			AAA52368.1
	U14187.1			AAC50078.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509502	Chr.1:154904407 - 155142291 on Build GRCh38	Insertion	DCST1 DCST2 FLAD1 PMVK PBXIP1 LOC101928120 LENEP EFNA1 EFNA3 ADAM15 CKS1B SHC1 LOC100505666 ZBTB7B MIR4258 SLC50A1 DPM3 EFNA4 PYGO2
esv3587616	Chr.1:155055926 - 155098657 on Build GRCh38	Gain	LOC100505666 EFNA4 EFNA3 ADAM15
esv3587615	Chr.1:155047853 - 155175013 on Build GRCh38	Gain	KRTCAP2 TRIM46 DCST1 LOC100505666 SLC50A1 DPM3 EFNA4 EFNA1 EFNA3 ADAM15
nsv952212	Chr.1:154998225 - 155087624 on Build GRCh38	Deletion	DCST1 DCST2 LOC100505666 ZBTB7B EFNA4 EFNA3 ADAM15

More Information

Additional Information:

For this assay, SNP(s) [rs77832800] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane-bound signaling molecule

Gene Ontology Categories:

Process(es)

cell-cell signaling
axon guidance
ephrin receptor signaling pathway

Function(s)

transmembrane-ephrin receptor activity
protein binding
ephrin receptor binding