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See other LOC102724058 CNV Assays ›
Gene Symbol
LOC102724058
Assay Reference Genome
Location

Chr.2:165991025 on build GRCh38
Cytoband
2q24.3
Assay ID Hs01969012_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 102724058

Gene Name:

 uncharacterized LOC102724058

Gene Aliases:

 -

Location:

 Chr.2:165957418-166036400 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC102724058 NR_110598.1
HY008183.1
HY011842.1
HY029566.1

Target Gene Details

Entrez Gene ID:

 6323

Gene Name:

 sodium voltage-gated channel alpha subunit 1

Gene Aliases:

 EIEE6, FEB3, FEB3A, FHM3, GEFSP2, HBSCI, NAC1, Nav1.1, SCN1, SMEI

Location:

 Chr.2:165989160-166149216 on Build GRCh38

Assay Gene Location:

 Within Exon 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCN1A NM_001165963.1 26 6268 NP_001159435.1
NM_001165964.1 26 6184 NP_001159436.1
NM_001202435.1 28 6477 NP_001189364.1
NM_006920.4 26 6235 NP_008851.3
XM_011511602.2 27 6544 XP_011509904.1
XM_011511605.2 28 6608 XP_011509907.1
XM_011511606.2 28 6552 XP_011509908.1
XM_017004644.1 29 6723 XP_016860133.1
XM_017004650.1 27 6510 XP_016860139.1
XM_017004651.1 28 6415 XP_016860140.1
XM_017004652.1 27 6455 XP_016860141.1
XM_017004653.1 28 6562 XP_016860142.1
XM_017004654.1 28 6643 XP_016860143.1
AF225985.1 26 6238 AAK00217.1
AK094487.1
AK293759.1 2 1526
AK294900.1 6 2011

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv834445 Chr.2:165800387 - 165995152 on Build GRCh38 Gain+Loss LOC102724058 LOC100506124 TTC21B TTC21B-AS1 SCN1A

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More Information


Additional Information:

For this assay, SNP(s) [rs113696479] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

voltage-gated ion channel

Gene Ontology Categories:

Function(s) Process(es)


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