Hs01979305_cn

• Gene Symbol: CCDC88B
• Assay Reference Genome Location: Chr.11:64342313 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 283234
• Gene Name: coiled-coil domain containing 88B
• Gene Aliases: BRLZ, CCDC88, HKRP3, gipie
• Location: Chr.11:64340203-64357534 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC88B	NM_032251.5			NP_115627.6
	XM_006718519.3			XP_006718582.1
	XM_011544957.2			XP_011543259.1
	XM_011544959.2			XP_011543261.1
	XM_011544960.2			XP_011543262.1
	XM_017017601.1			XP_016873090.1
	AK074126.1			BAB84952.1
	AK090436.1			BAC03417.1
	BC140822.1
	BC140824.1
	BC141866.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv555193	Chr.11:64339671 - 64353102 on Build GRCh38	Loss	CCDC88B MIR7155
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	STIP1 GPR137 KCNK4-TEX40 BAD FERMT3 TRMT112 OTUB1 DNAJC4 VEGFB TEX40 FKBP2 PLCB3 FLRT1 ESRRA PRDX5 TRPT1 NUDT22 MACROD1 NAA40 LOC105369340 CCDC88B PPP1R14B COX8A MIR7155 KCNK4
nsv358	Chr.11:64325464 - 64359765 on Build GRCh38	Insertion	RPS6KA4 CCDC88B MIR7155
nsv832186	Chr.11:64204788 - 64402587 on Build GRCh38	Loss	RPS6KA4 TEX40 FKBP2 PLCB3 ESRRA MIR1237 PRDX5 GPR137 TRPT1 NUDT22 KCNK4-TEX40 BAD LOC105369340 CCDC88B PPP1R14B FERMT3 TRMT112 MIR7155 DNAJC4 KCNK4 VEGFB
dgv13n64	Chr.11:64329761 - 64362250 on Build GRCh38	Loss	RPS6KA4 CCDC88B MIR7155

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of T cell proliferation
positive regulation of T cell activation