Hs02011706_cn

• Gene Symbol: CIRBP
• Assay Reference Genome Location: Chr.19:1269364 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 1153
• Gene Name: cold inducible RNA binding protein
• Gene Aliases: CIRP
• Location: Chr.19:1269266-1274810 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CIRBP	NM_001280.2	1	97	NP_001271.1
	NM_001300815.1	1	99	NP_001287744.1
	NM_001300829.1	1	99	NP_001287758.1
	NR_023312.2	1	97
	NR_023313.2	1	97
	XM_006722637.1	1	99	XP_006722700.1
	XM_011527668.1			XP_011525970.1
	XM_017026237.1	1	99	XP_016881726.1
	AF021336.1			AAC51787.1
	AK094781.1
	AK095781.1
	AK128423.1			BAC87434.1
	AK304185.1
	AK304470.1
	AK311601.1
	BC000403.2			AAH00403.1
	BC000901.1			AAH00901.1
	BM706055.1
	BP195090.1	1	97
	D78134.1			BAA11212.1
	DA433715.1
	DA695021.1	1	99

Target Gene Details

• Entrez Gene ID: 148046
• Gene Name: CIRBP antisense RNA 1
• Gene Aliases: C19orf23
• Location: Chr.19:1267471-1270260 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CIRBP-AS1	NR_027271.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1058677	Chr.19:1054061 - 1283189 on Build GRCh38	Loss	CBARP ATP5D STK11 C19orf24 POLR2E EFNA2 LOC102725180 MIDN GPX4 ARHGAP45 CIRBP CIRBP-AS1 SBNO2 ABCA7
dgv136n111	Chr.19:1038223 - 1329640 on Build GRCh38	Deletion	CBARP ATP5D STK11 C19orf24 POLR2E EFNA2 LOC102725180 MIDN GPX4 ARHGAP45 CIRBP CNN2 CIRBP-AS1 SBNO2 ABCA7
nsv470104	Chr.19:1170446 - 1325151 on Build GRCh38	Loss	CBARP CIRBP ATP5D CIRBP-AS1 STK11 C19orf24 SBNO2 EFNA2 LOC102725180 MIDN
nsv953941	Chr.19:1205602 - 1322401 on Build GRCh38	Deletion	CBARP CIRBP ATP5D CIRBP-AS1 STK11 C19orf24 EFNA2 MIDN
nsv828371	Chr.19:1257222 - 1274100 on Build GRCh38	Loss	CIRBP CIRBP-AS1 MIDN
nsv1060536	Chr.19:1228266 - 1329640 on Build GRCh38	Gain	CBARP CIRBP ATP5D CIRBP-AS1 STK11 C19orf24 EFNA2 MIDN
esv3643389	Chr.19:1264454 - 1397379 on Build GRCh38	Gain	CIRBP NDUFS7 GAMT CIRBP-AS1 C19orf24 EFNA2 MUM1
nsv470103	Chr.19:1086044 - 1325151 on Build GRCh38	Gain	CBARP ATP5D STK11 C19orf24 POLR2E EFNA2 LOC102725180 MIDN GPX4 ARHGAP45 CIRBP CIRBP-AS1 SBNO2
nsv1055164	Chr.19:1246647 - 1389804 on Build GRCh38	Gain	CIRBP NDUFS7 CIRBP-AS1 C19orf24 EFNA2 MIDN MUM1
nsv9662	Chr.19:893394 - 1317740 on Build GRCh38	Gain	CBARP ATP5D STK11 GRIN3B C19orf24 POLR2E EFNA2 LOC102725180 MIDN RNU6-2 GPX4 KISS1R ARHGAP45 CIRBP RNU6-9 CNN2 WDR18 CIRBP-AS1 SBNO2 LOC105372235 TMEM259 R3HDM4 ABCA7 ARID3A
nsv1160555	Chr.19:887275 - 1346084 on Build GRCh38	Deletion	STK11 GRIN3B C19orf24 LOC102725180 MIDN RNU6-2 GPX4 KISS1R ARHGAP45 CIRBP CNN2 CIRBP-AS1 LOC105372235 ABCA7 CBARP ATP5D POLR2E EFNA2 RNU6-9 WDR18 MED16 SBNO2 TMEM259 R3HDM4 ARID3A
esv2758743	Chr.19:951641 - 1544934 on Build GRCh38	Gain+Loss	NDUFS7 STK11 GRIN3B C19orf24 LOC102725180 MIDN RNU6-2 DAZAP1 GPX4 ARHGAP45 CIRBP CNN2 GAMT CIRBP-AS1 REEP6 PCSK4 LOC105372235 ABCA7 CBARP ATP5D C19orf25 POLR2E EFNA2 PLK5 WDR18 SBNO2 ADAMTSL5 RPS15 TMEM259 ARID3A MUM1 APC2
nsv828368	Chr.19:1223051 - 1274100 on Build GRCh38	Gain	CBARP CIRBP ATP5D CIRBP-AS1 STK11 MIDN

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

response to cold
response to UV
negative regulation of translation
stress granule assembly
positive regulation of translation
mRNA stabilization

Function(s)

nucleotide binding
mRNA 3'-UTR binding
protein binding
translation repressor activity
poly(A) RNA binding
small ribosomal subunit rRNA binding