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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31665096 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02016750_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 NP_001186166.1
NM_001199238.1 NP_001186167.1
NM_001199239.1 NP_001186168.1
NM_001199240.1 NP_001186169.1
NM_033177.3 1 307 NP_149417.1
XM_005249403.3 XP_005249460.1
XM_006715204.1 XP_006715267.1
XM_011514909.1 XP_011513211.1
XM_011514910.1 XP_011513212.1
AK123707.1
AK314056.1
BC008783.1 1 297 AAH08783.1
DA368924.1 1 307

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion PPT2-EGFL8 MCCD1 HLA-DRB5 CFB LOC102725068 SNORD52 HLA-DRB1 AIF1 NFKBIL1 C4A CYP21A2 ABHD16A LOC100287329 HSPA1B HCP5 LY6G6C VWA7 EHMT2 NEU1 BTNL2 ZBTB12 DDAH2 C4B STK19 C6orf47 ATP6V1G2-DDX39B SAPCD1 SNORD48 VARS LTB LTA MIR6721 MIR1236 SNORD117 SNORA38 NELFE TNXB LY6G6F MIR6833 SKIV2L SAPCD1-AS1 LST1 LY6G5B C6orf48 DDX39B-AS1 AGPAT1 NCR3 LOC101929163 GPANK1 TNXA C2-AS1 ATF6B LOC100507547 PRRT1 PPT2 HSPA1L PBX2 HSPA1A LY6G5C SNORD84 HCG26 C6orf10 MIR6832 SLC44A4 APOM CLIC1 NOTCH4 HLA-DRA CYP21A1P MICB HLA-DRB6 C2 BAG6 DXO MSH5-SAPCD1 PRRC2A MIR4646 DDX39B AGER EGFL8 LY6G6D LSM2 TNF LY6G6E FKBPL CSNK2B HCG23 ATP6V1G2 RNF5 MSH5 C6orf25 GPSM3
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MCCD1 HLA-DRB5 CFB LOC102725068 SNORD52 AIF1 C4A CYP21A2 ABHD16A HSPA1B HCP5 LY6G6C NEU1 MIR3135B DDAH2 HSD17B8 C4B SAPCD1 VARS LTB PHF1 RPS18 MIR1236 SLC39A7 HLA-DPA1 SNORD117 SNORA38 NELFE TAPBP KIFC1 TNXB MIR6833 SKIV2L HLA-DOB LY6G5B HLA-DPB1 AGPAT1 NCR3 ZBTB9 PFDN6 TAP2 LOC100507547 PPT2 RGL2 HSPA1L PBX2 HSPA1A HLA-DQB2 C6orf10 MIR6832 SLC44A4 NOTCH4 CYP21A1P MIR5004 HLA-DRB6 VPS52 PRRC2A DAXX DDX39B LOC100294145 AGER LY6G6D LY6G6E CSNK2B HCG23 PPT2-EGFL8 HLA-DPB2 HLA-DRB1 NFKBIL1 COL11A2 HLA-DQA2 WDR46 LOC100287329 HLA-DMA PSMB9 VWA7 EHMT2 BTNL2 ZBTB12 STK19 C6orf47 ATP6V1G2-DDX39B SNORD48 LTA MIR6721 MIR6834 HCG24 RING1 MIR219A1 LY6G6F CUTA HLA-DMB SAPCD1-AS1 LST1 C6orf48 RXRB DDX39B-AS1 MIR6873 LOC101929163 GPANK1 TNXA C2-AS1 HCG25 ATF6B PRRT1 LY6G5C PSMB8-AS1 HLA-DQB1 SNORD84 HCG26 APOM CLIC1 HLA-DRA MICB C2 BAG6 DXO MSH5-SAPCD1 B3GALT4 HLA-DQA1 ZBTB22 MIR4646 PPP1R2P1 EGFL8 LSM2 HLA-DOA TNF FKBPL ATP6V1G2 TAP1 RNF5 MSH5 SYNGAP1 BRD2 PSMB8 C6orf25 HLA-DQB1-AS1 GPSM3
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MCCD1 CFB LOC102725068 SNORD52 AIF1 MIR6891 NFKBIL1 C4A CYP21A2 ABHD16A LOC100287329 HSPA1B HCP5 HLA-B LY6G6C VWA7 EHMT2 NEU1 ZBTB12 DDAH2 C4B STK19 C6orf47 ATP6V1G2-DDX39B SAPCD1 SNORD48 VARS LTB LTA MICA MIR1236 SNORD117 SNORA38 NELFE TNXB LY6G6F SKIV2L SAPCD1-AS1 LST1 LY6G5B C6orf48 DDX39B-AS1 NCR3 GPANK1 TNXA C2-AS1 HSPA1L HSPA1A LY6G5C SNORD84 HCG26 MIR6832 SLC44A4 APOM CLIC1 CYP21A1P MICB C2 BAG6 DXO MSH5-SAPCD1 PRRC2A MIR4646 DDX39B LY6G6D LSM2 TNF LY6G6E CSNK2B ATP6V1G2 MSH5 C6orf25
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MCCD1 HLA-DRB5 CFB LOC102725068 SNORD52 AIF1 C4A CYP21A2 ABHD16A HSPA1B HCP5 LY6G6C NEU1 MIR3135B DDAH2 HSD17B8 C4B SAPCD1 VARS LTB PHF1 RPS18 MIR1236 SLC39A7 HLA-DPA1 SNORD117 SNORA38 NELFE TAPBP KIFC1 TNXB MIR6833 SKIV2L HLA-DOB LY6G5B HLA-DPB1 AGPAT1 NCR3 ZBTB9 PFDN6 TAP2 LOC100507547 PPT2 RGL2 HSPA1L PBX2 HSPA1A HLA-DQB2 C6orf10 MIR6832 SLC44A4 NOTCH4 CYP21A1P MIR5004 HLA-DRB6 VPS52 PRRC2A DAXX DDX39B LOC100294145 AGER LY6G6D LY6G6E CSNK2B HCG23 PPT2-EGFL8 HLA-DPB2 HLA-DRB1 NFKBIL1 COL11A2 HLA-DQA2 WDR46 LOC100287329 HLA-DMA PSMB9 VWA7 EHMT2 BTNL2 ZBTB12 STK19 C6orf47 ATP6V1G2-DDX39B SNORD48 LTA MIR6721 MIR6834 HCG24 RING1 MIR219A1 LY6G6F CUTA HLA-DMB SAPCD1-AS1 LST1 C6orf48 RXRB DDX39B-AS1 MIR6873 LOC101929163 GPANK1 TNXA C2-AS1 HCG25 ATF6B PRRT1 LY6G5C PSMB8-AS1 HLA-DQB1 SNORD84 HCG26 APOM CLIC1 HLA-DRA MICB C2 BAG6 DXO MSH5-SAPCD1 B3GALT4 HLA-DQA1 ZBTB22 MIR4646 PPP1R2P1 EGFL8 LSM2 HLA-DOA TNF FKBPL ATP6V1G2 TAP1 RNF5 MSH5 SYNGAP1 BRD2 PSMB8 C6orf25 HLA-DQB1-AS1 GPSM3
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss PPT2-EGFL8 MCCD1 CFB LOC102725068 SNORD52 AIF1 MIR6891 NFKBIL1 C4A CYP21A2 ABHD16A LOC100287329 HSPA1B HCP5 HLA-B LY6G6C VWA7 EHMT2 NEU1 BTNL2 ZBTB12 DDAH2 C4B STK19 C6orf47 ATP6V1G2-DDX39B SAPCD1 SNORD48 VARS LTB LTA MIR6721 MICA MIR1236 SNORD117 SNORA38 NELFE TNXB LY6G6F MIR6833 SKIV2L SAPCD1-AS1 LST1 LY6G5B C6orf48 DDX39B-AS1 AGPAT1 NCR3 LOC101929163 GPANK1 TNXA C2-AS1 ATF6B LOC100507547 PRRT1 PPT2 HSPA1L PBX2 HSPA1A LY6G5C SNORD84 HCG26 C6orf10 MIR6832 SLC44A4 APOM CLIC1 NOTCH4 HLA-DRA CYP21A1P MICB C2 BAG6 DXO MSH5-SAPCD1 PRRC2A MIR4646 DDX39B AGER EGFL8 LY6G6D LSM2 TNF LY6G6E FKBPL CSNK2B HCG23 ATP6V1G2 RNF5 MSH5 C6orf25 GPSM3
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion GPANK1 BAG6 AIF1 PRRC2A SNORA38 ABHD16A MIR4646 LY6G6F LY6G5C LY6G6E CSNK2B MIR6832 APOM LY6G5B C6orf47
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss NCR3 MCCD1 GPANK1 AIF1 NFKBIL1 ABHD16A LOC100287329 LY6G5C SNORD84 MIR6832 APOM C6orf47 ATP6V1G2-DDX39B LTB LTA BAG6 SNORD117 PRRC2A SNORA38 DDX39B TNF CSNK2B ATP6V1G2 LST1 LY6G5B DDX39B-AS1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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