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See other SYNGAP1 CNV Assays ›
Gene Symbol
SYNGAP1
Assay Reference Genome
Location

Chr.6:33423599 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02023149_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8831

Gene Name:

 synaptic Ras GTPase activating protein 1

Gene Aliases:

 MRD5, RASA1, RASA5, SYNGAP

Location:

 Chr.6:33420070-33453689 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 2 - Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SYNGAP1 NM_006772.2 NP_006763.2
AK094225.1
AK307888.1
DA057307.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss SYNGAP1 CUTA MIR5004 KIFC1 ZBTB9 PHF1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss SYNGAP1 ZBTB22 CUTA RGL2 MIR6873 KIFC1 PFDN6 MIR6834 RPS18 PHF1 DAXX WDR46 VPS52 MIR5004 B3GALT4 TAPBP
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LOC100287329 SNORA38 HLA-DRB6 MIR6873 DXO PBX2 EHMT2 SNORD117 NCR3 BRD2 MIR6834 ZBTB9 TNXA MIR6833 DAXX LOC101929163 DDAH2 HSD17B8 HCG26 APOM BAG6 HCP5 SAPCD1 SLC39A7 CUTA HLA-DQA2 LST1 DDX39B-AS1 HLA-DQB2 HLA-DPB2 C2 STK19 LY6G5B C6orf48 AIF1 VPS52 MIR5004 C2-AS1 HLA-DQB1-AS1 LOC102725068 MSH5 PRRT1 HCG24 NEU1 HSPA1L HLA-DMA SLC44A4 LY6G6E LTA HLA-DMB RING1 HLA-DRB1 NOTCH4 LY6G6F TAPBP HLA-DQB1 EGFL8 HLA-DPA1 PPP1R2P1 CSNK2B VWA7 RPS18 LOC100294145 HLA-DPB1 HLA-DQA1 MIR219A1 MSH5-SAPCD1 PPT2 ZBTB22 HSPA1B COL11A2 CLIC1 NELFE SNORD52 GPANK1 PSMB8 HCG25 SNORD48 DDX39B PSMB8-AS1 SKIV2L SNORD84 LOC100507547 LY6G6D ZBTB12 PPT2-EGFL8 C6orf25 RGL2 NFKBIL1 KIFC1 LY6G5C PRRC2A CYP21A1P PHF1 MCCD1 SAPCD1-AS1 HLA-DRB5 MIR6721 HLA-DRA TAP1 HSPA1A MIR6832 TNF ATF6B GPSM3 TAP2 MIR4646 HLA-DOA LY6G6C ABHD16A WDR46 C6orf47 C6orf10 HCG23 FKBPL MIR1236 MICB CFB SYNGAP1 TNXB C4B C4A VARS ATP6V1G2-DDX39B PSMB9 PFDN6 RNF5 CYP21A2 LSM2 BTNL2 HLA-DOB AGER B3GALT4 ATP6V1G2 MIR3135B LTB AGPAT1 RXRB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LOC100287329 SNORA38 HLA-DRB6 MIR6873 DXO PBX2 EHMT2 SNORD117 NCR3 BRD2 MIR6834 ZBTB9 TNXA MIR6833 DAXX LOC101929163 DDAH2 HSD17B8 HCG26 APOM BAG6 HCP5 SAPCD1 SLC39A7 CUTA HLA-DQA2 LST1 DDX39B-AS1 HLA-DQB2 HLA-DPB2 C2 STK19 LY6G5B C6orf48 AIF1 VPS52 MIR5004 C2-AS1 HLA-DQB1-AS1 LOC102725068 MSH5 PRRT1 HCG24 NEU1 HSPA1L HLA-DMA SLC44A4 LY6G6E LTA HLA-DMB RING1 HLA-DRB1 NOTCH4 LY6G6F TAPBP HLA-DQB1 EGFL8 HLA-DPA1 PPP1R2P1 CSNK2B VWA7 RPS18 LOC100294145 HLA-DPB1 HLA-DQA1 MIR219A1 MSH5-SAPCD1 PPT2 ZBTB22 HSPA1B COL11A2 CLIC1 NELFE SNORD52 GPANK1 PSMB8 HCG25 SNORD48 DDX39B PSMB8-AS1 SKIV2L SNORD84 LOC100507547 LY6G6D ZBTB12 PPT2-EGFL8 C6orf25 RGL2 NFKBIL1 KIFC1 LY6G5C PRRC2A CYP21A1P PHF1 MCCD1 SAPCD1-AS1 HLA-DRB5 MIR6721 HLA-DRA TAP1 HSPA1A MIR6832 TNF ATF6B GPSM3 TAP2 MIR4646 HLA-DOA LY6G6C ABHD16A WDR46 C6orf47 C6orf10 HCG23 FKBPL MIR1236 MICB CFB SYNGAP1 TNXB C4B C4A VARS ATP6V1G2-DDX39B PSMB9 PFDN6 RNF5 CYP21A2 LSM2 BTNL2 HLA-DOB AGER B3GALT4 ATP6V1G2 MIR3135B LTB AGPAT1 RXRB
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss SYNGAP1 CUTA MIR5004 ZBTB9 PHF1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DQB1-AS1 ZBTB22 COL11A2 TAP2 MIR6873 PSMB8 BRD2 MIR6834 HCG25 HLA-DOA ZBTB9 HCG24 HLA-DMA DAXX WDR46 PSMB8-AS1 HLA-DMB HSD17B8 RING1 SLC39A7 TAPBP HLA-DQB1 SYNGAP1 HLA-DPA1 CUTA HLA-DQA2 RGL2 PPP1R2P1 HLA-DQB2 HLA-DPB2 KIFC1 PSMB9 PFDN6 RPS18 PHF1 LOC100294145 HLA-DPB1 HLA-DOB VPS52 HLA-DQA1 MIR5004 MIR219A1 B3GALT4 MIR3135B RXRB TAP1

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