Hs02026151_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137041131 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3	3	551	NP_056207.3
	AF272357.1	3	398	AAF76225.1
	AF283247.1	2	204	AAF82603.1
	AF285836.1	3	530	AAK27328.1
	AF327349.1	3	483	AAL56010.1
	AK054950.1	2	1223
	AK074793.1	3	504	BAC11212.1
	AK225091.1	3	357
	BC004217.2	3	435	AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	ENTPD2 MIR3621 PRR31 C9orf142 PTGDS LOC101930307 NPDC1 ABCA2 MAN1B1-AS1 UAP1L1 DPP7 GRIN1 CLIC3 MAN1B1 FUT7 LRRC26 C9orf139 SAPCD2 TMEM210 LCNL1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	CCDC183-AS1 TMEM203 PNPLA7 NDOR1 LCN12 EDF1 C9orf173-AS1 ENTPD8 CYSRT1 UAP1L1 DPP7 GRIN1 STPG3 TPRN SSNA1 C9orf139 NOXA1 ENTPD2 MIR3621 C9orf142 PTGDS FAM166A NPDC1 ABCA2 CCDC183 MIR4292 EXD3 LCNL1 RABL6 NSMF LOC101930307 PHPT1 NELFB FBXW5 C9orf172 CLIC3 MIR4479 ANAPC2 MAN1B1 FUT7 LRRC26 SAPCD2 TUBB4B TMEM210 RNF224 SLC34A3 NRARP PRR31 MAN1B1-AS1 MAMDC4 MIR7114 RNF208 C8G TRAF2 TOR4A
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ENTPD2 LCN12 PRR31 C9orf142 PTGDS LOC101930307 NPDC1 ABCA2 MAN1B1-AS1 UAP1L1 DPP7 CLIC3 MAN1B1 FUT7 C8G C9orf139 SAPCD2 LCNL1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	HSPC324 CCDC183-AS1 MIR4673 LCN12 EDF1 PMPCA SNORA17A UAP1L1 DPP7 GRIN1 MIR126 C9orf139 SNORA17B ENTPD2 MIR3621 C9orf142 PTGDS NPDC1 ABCA2 DNLZ CCDC183 LCN10 C9orf163 TMEM141 MIR4292 AGPAT2 EGFL7 LOC100128593 LCNL1 RABL6 NOTCH1 NALT1 FAM69B LOC101930307 PHPT1 FBXW5 C9orf172 LCN15 CLIC3 LINC01451 MIR4479 SDCCAG3 SEC16A MIR6722 MAN1B1 FUT7 LRRC26 SAPCD2 TMEM210 INPP5E PRR31 LCN6 LCN8 MAN1B1-AS1 CARD9 MAMDC4 SNHG7 C8G SNAPC4 TRAF2 MIR4674
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	ENTPD2 MIR3621 LOC101930307 NPDC1 MAN1B1-AS1 UAP1L1 DPP7 GRIN1 MAN1B1 LRRC26 C9orf139 SAPCD2 TMEM210
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ENTPD2 MIR3621 LOC101930307 NPDC1 MAN1B1-AS1 UAP1L1 DPP7 GRIN1 ANAPC2 MAN1B1 SSNA1 FUT7 LRRC26 C9orf139 SAPCD2 TMEM210
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 NPDC1 FUT7 ABCA2 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	HSPC324 CCDC183-AS1 TMEM203 NDOR1 LCN12 EDF1 C9orf173-AS1 SNORA17A CYSRT1 UAP1L1 DPP7 GRIN1 STPG3 MIR126 TPRN SSNA1 C9orf139 SNORA17B ENTPD2 MIR3621 C9orf142 PTGDS FAM166A NPDC1 ABCA2 CCDC183 LCN10 TMEM141 MIR4292 AGPAT2 EXD3 EGFL7 LOC100128593 LCNL1 RABL6 FAM69B LOC101930307 PHPT1 NELFB FBXW5 C9orf172 LCN15 CLIC3 LINC01451 MIR4479 ANAPC2 MIR6722 MAN1B1 FUT7 LRRC26 SAPCD2 TUBB4B TMEM210 RNF224 SLC34A3 NRARP PRR31 LCN6 LCN8 MAN1B1-AS1 MAMDC4 SNHG7 RNF208 C8G TRAF2 TOR4A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding