Name: [Hs02075196_cn] [CSGALNACT1]
Creator: Thermo Fisher Scientific
Keywords: [CSGALNACT1] Assay, [chondroitin sulfate N-acetylgalactosaminyltransferase 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	55790
Gene Name:	chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene Aliases:	CSGalNAcT-1, ChGn, beta4GalNAcT
Location:	Chr.8:19404161-19757940 on Build GRCh38
Assay Gene Location:	Within Exon 30

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CSGALNACT1	NM_001130518.1	10	3075	NP_001123990.1
	NM_018371.4	10	2665	NP_060841.5
	NR_024040.1	10	2744
	XM_006716358.2	9	2956	XP_006716421.1
	XM_006716359.2	10	3325	XP_006716422.1
	XM_006716360.2	11	3473	XP_006716423.1
	XM_006716361.2	10	3220	XP_006716424.1
	XM_006716362.2	9	2543	XP_006716425.1
	XM_006716363.1	9	2715	XP_006716426.1
	XM_006716364.3	8	2399	XP_006716427.1
	XM_011544578.1	12	3592	XP_011542880.1
	XM_011544579.1	11	3444	XP_011542881.1
	XM_011544580.1	10	3322	XP_011542882.1
	XM_011544582.1	10	3330	XP_011542884.1
	XM_011544583.1	8	2509	XP_011542885.1
	XM_011544584.1	8	2393	XP_011542886.1
	XM_011544585.2	7	1476	XP_011542887.1
	XM_017013623.1	13	3642	XP_016869112.1
	XM_017013624.1	10	3281	XP_016869113.1
	XM_017013625.1	8	2558	XP_016869114.1
	XM_017013626.1	9	2488	XP_016869115.1
	XM_017013627.1	10	4882	XP_016869116.1
	XM_017013628.1	9	4742	XP_016869117.1
	XM_017013629.1	10	2673	XP_016869118.1
	XM_017013630.1	10	2586	XP_016869119.1
	XM_017013631.1	9	2547	XP_016869120.1
	XM_017013632.1	10	2656	XP_016869121.1
	XM_017013633.1	10	2643	XP_016869122.1
	XM_017013634.1	10	2640	XP_016869123.1
	XM_017013635.1	10	2648	XP_016869124.1
	XM_017013636.1	11	2791	XP_016869125.1
	XM_017013637.1	10	2648	XP_016869126.1
	XM_017013638.1	11	2833	XP_016869127.1
	XM_017013639.1	9	2481	XP_016869128.1
	AB081516.1	8	2353	BAC16217.1
	AK002124.1	1	424
	AK002126.1	7	1602	BAA92093.1
	AL157483.1	3	872	CAB75673.1
	AY358441.1	10	2665	AAQ88806.1
	BX649103.1	10	3025
	CR998055.1	1	423

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3616532	Chr.8:18974801 - 19484110 on Build GRCh38	Gain	LOC100128993 CSGALNACT1 SH2D4A PSD3
nsv610752	Chr.8:19397305 - 19453985 on Build GRCh38	Loss	CSGALNACT1
nsv610751	Chr.8:19368824 - 19427378 on Build GRCh38	Loss	CSGALNACT1 SH2D4A
esv34007	Chr.8:19395091 - 19624587 on Build GRCh38	Loss	CSGALNACT1 SH2D4A
nsv522185	Chr.8:19097292 - 20497802 on Build GRCh38	Gain	LZTS1-AS1 LOC100128993 LZTS1 CSGALNACT1 SH2D4A SLC18A1 ATP6V1B2 INTS10 LPL
nsv1016482	Chr.8:18977297 - 19481976 on Build GRCh38	Gain	LOC100128993 CSGALNACT1 SH2D4A PSD3