Hs02094967_cn

• Gene Symbol: GATS
• Assay Reference Genome Location: Chr.7:100200536 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 352954
• Gene Name: GATS, stromal antigen 3 opposite strand
• Gene Aliases: STAG3OS
• Location: Chr.7:100187988-100272274 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATS	XM_017012156.1			XP_016867645.1

Target Gene Details

• Entrez Gene ID: 10734
• Gene Name: stromal antigen 3
• Gene Aliases: -
• Location: Chr.7:100177563-100219334 on Build GRCh38
• Assay Gene Location: Overlaps Exon 18 - Intron 18

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STAG3	NM_001282716.1			NP_001269645.1
	NM_001282717.1			NP_001269646.1
	NM_001282718.1			NP_001269647.1
	NM_012447.3			NP_036579.2
	XM_011515742.1			XP_011514044.1
	XM_017011683.1			XP_016867172.1
	XM_017011684.1			XP_016867173.1
	XM_017011685.1			XP_016867174.1
	XM_017011686.1			XP_016867175.1
	XM_017011687.1			XP_016867176.1
	AJ007798.2			CAB59367.1
	AK292394.1
	AK302587.1
	AK302693.1
	AL833816.1			CAD38679.2
	BC140932.1
	BC146806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv5867	Chr.7:100169151 - 100202132 on Build GRCh38	Deletion	STAG3 GATS GPC2
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	LAMTOR4 PILRB CNPY4 SERPINE1 MEPCE MUC12 SAP25 NAT16 PCOLCE-AS1 PILRA MIR4653 CLDN15 TAF6 PVRIG2P AZGP1P1 MIR106B MOSPD3 C7orf61 EPHB4 TFR2 GNB2 MUC17 PVRIG MIR6875 LOC105375429 STAG3 FIS1 MIR6840 GIGYF1 NYAP1 ZCWPW1 SRRT MCM7 AP1S1 MIR25 LOC102724094 UFSP1 C7orf43 ZAN TRIM56 MBLAC1 PCOLCE SPDYE3 GPC2 MUC3A STAG3L5P-PVRIG2P-PILRB VGF MIR93 PPP1R35 PLOD3 ZSCAN21 AGFG2 ZKSCAN1 ZASP ZNF3 STAG3L5P FBXO24 LRCH4 COPS6 ACHE GATS GAL3ST4 ACTL6B TSC22D4 SLC12A9 MOGAT3 EPO MIR4658 PMS2P1 TRIP6 AP4M1 ZNHIT1 AZGP1 POP7
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	LAMTOR4 PILRB STAG3 STAG3L5P-PVRIG2P-PILRB MIR6840 MIR4658 PMS2P1 PVRIG2P STAG3L5P C7orf43 GATS SPDYE3 GPC2 PVRIG GAL3ST4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

synaptonemal complex assembly