Hs02110089_cn

• Gene Symbol: CIRBP
• Assay Reference Genome Location: Chr.19:1270148 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 1153
• Gene Name: cold inducible RNA binding protein
• Gene Aliases: CIRP
• Location: Chr.19:1269266-1274810 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CIRBP	NM_001280.2			NP_001271.1
	NM_001300815.1			NP_001287744.1
	NM_001300829.1			NP_001287758.1
	NR_023312.2
	NR_023313.2
	XM_006722637.1			XP_006722700.1
	XM_011527668.1			XP_011525970.1
	XM_017026237.1			XP_016881726.1
	AF021336.1			AAC51787.1
	AK094781.1
	AK095781.1
	AK128423.1			BAC87434.1
	AK304185.1
	AK304470.1
	AK311601.1
	BC000403.2			AAH00403.1
	BC000901.1			AAH00901.1
	BM706055.1
	BP195090.1
	D78134.1			BAA11212.1
	DA433715.1
	DA695021.1

Target Gene Details

• Entrez Gene ID: 148046
• Gene Name: CIRBP antisense RNA 1
• Gene Aliases: C19orf23
• Location: Chr.19:1267471-1270260 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CIRBP-AS1	NR_027271.1	1	113

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1058677	Chr.19:1054061 - 1283189 on Build GRCh38	Loss	GPX4 CBARP STK11 CIRBP CIRBP-AS1 POLR2E ATP5D ARHGAP45 LOC102725180 EFNA2 MIDN SBNO2 C19orf24 ABCA7
dgv136n111	Chr.19:1038223 - 1329640 on Build GRCh38	Deletion	CNN2 GPX4 CBARP STK11 CIRBP CIRBP-AS1 POLR2E ATP5D ARHGAP45 LOC102725180 EFNA2 MIDN SBNO2 C19orf24 ABCA7
nsv470104	Chr.19:1170446 - 1325151 on Build GRCh38	Loss	ATP5D LOC102725180 EFNA2 CBARP MIDN SBNO2 STK11 C19orf24 CIRBP CIRBP-AS1
nsv953941	Chr.19:1205602 - 1322401 on Build GRCh38	Deletion	ATP5D EFNA2 CBARP MIDN STK11 C19orf24 CIRBP CIRBP-AS1
nsv828371	Chr.19:1257222 - 1274100 on Build GRCh38	Loss	MIDN CIRBP CIRBP-AS1
nsv1060536	Chr.19:1228266 - 1329640 on Build GRCh38	Gain	ATP5D EFNA2 CBARP MIDN STK11 C19orf24 CIRBP CIRBP-AS1
esv3643389	Chr.19:1264454 - 1397379 on Build GRCh38	Gain	GAMT EFNA2 NDUFS7 MUM1 C19orf24 CIRBP CIRBP-AS1
nsv470103	Chr.19:1086044 - 1325151 on Build GRCh38	Gain	GPX4 CBARP STK11 CIRBP CIRBP-AS1 POLR2E ATP5D ARHGAP45 LOC102725180 EFNA2 MIDN SBNO2 C19orf24
nsv1055164	Chr.19:1246647 - 1389804 on Build GRCh38	Gain	EFNA2 NDUFS7 MIDN MUM1 C19orf24 CIRBP CIRBP-AS1
nsv9662	Chr.19:893394 - 1317740 on Build GRCh38	Gain	CNN2 GPX4 CBARP STK11 RNU6-9 TMEM259 KISS1R CIRBP CIRBP-AS1 LOC105372235 POLR2E ARID3A GRIN3B ATP5D ARHGAP45 LOC102725180 EFNA2 RNU6-2 WDR18 R3HDM4 MIDN SBNO2 C19orf24 ABCA7
nsv1160555	Chr.19:887275 - 1346084 on Build GRCh38	Deletion	CNN2 RNU6-9 TMEM259 KISS1R MED16 CIRBP-AS1 GRIN3B ATP5D ARHGAP45 LOC102725180 EFNA2 SBNO2 GPX4 CBARP STK11 CIRBP LOC105372235 POLR2E ARID3A RNU6-2 WDR18 R3HDM4 MIDN C19orf24 ABCA7
esv2758743	Chr.19:951641 - 1544934 on Build GRCh38	Gain+Loss	GAMT CNN2 TMEM259 ADAMTSL5 CIRBP-AS1 GRIN3B ATP5D ARHGAP45 LOC102725180 EFNA2 SBNO2 RPS15 GPX4 PLK5 CBARP STK11 CIRBP LOC105372235 POLR2E ARID3A PCSK4 APC2 RNU6-2 NDUFS7 WDR18 DAZAP1 MIDN MUM1 C19orf25 C19orf24 ABCA7 REEP6
nsv828368	Chr.19:1223051 - 1274100 on Build GRCh38	Gain	ATP5D CBARP MIDN STK11 CIRBP CIRBP-AS1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

response to cold
response to UV
negative regulation of translation
stress granule assembly
positive regulation of translation
mRNA stabilization

Function(s)

nucleotide binding
mRNA 3'-UTR binding
protein binding
translation repressor activity
poly(A) RNA binding
small ribosomal subunit rRNA binding