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Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:767420 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02113185_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Within Exon 17
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 16 1654 NP_001170826.1
NM_005823.5 16 1714 NP_005814.2
NM_013404.4 15 1681 NP_037536.2
XM_005255034.4 15 1960 XP_005255091.1
XM_011522348.2 16 1751 XP_011520650.1
XM_017022853.1 15 1898 XP_016878342.1
XM_017022854.1 15 1909 XP_016878343.1
XM_017022855.1 15 1807 XP_016878344.1
XM_017022856.1 15 1808 XP_016878345.1
XM_017022857.1 17 1828 XP_016878346.1
XM_017022858.1 16 1748 XP_016878347.1
AF180951.1 5 658 AAF01409.1
AY743922.1 16 1714 AAV87530.1
BC003512.1 15 1960 AAH03512.1
BC009272.2 16 1653 AAH09272.1
D49441.1 15 1638 BAA08419.1
U40434.1 15 1663 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 PRR25 MSLN CHTF18 GNG13 RPUSD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PRR35 LOC100287175 NPW CRAMP1 NME3 HBA2 HS3ST6 CHTF18 GNG13 UBE2I CAPN15 LOC105371184 LOC105371038 ERVK13-1 MRPS34 PDIA2 MIR6859-4 HN1L MIR4516 PIGQ RGS11 RPL3L TBC1D24 MEIOB LOC106660606 MIR6511B1 FBXL16 SOX8 LINC00254 TMEM8A NPRL3 LOC101929280 C1QTNF8 MAPK8IP3 MIR3178 RHOT2 IFT140 NTHL1 LOC105371045 RNF151 ZNF598 PGP MIR3176 TPSB2 RPS2 PRSS29P MIR3177 CCDC78 LMF1-AS1 KCTD5 LOC107984876 STUB1 TBL3 MRPL28 DNASE1L2 CCDC154 MIR3180-5 RNPS1 CCNF GNPTG SYNGR3 LOC729652 NOXO1 SSTR5-AS1 HBM RHBDF1 PRR25 CACNA1H HBA1 EME2 METTL26 UNKL JMJD8 NUBP2 MIR1225 LOC100134368 NTN3 DECR2 NME4 CLCN7 SNHG19 C16orf59 SNORA64 METRN MIR4717 SPSB3 WFIKKN1 BAIAP3 AMDHD2 RAB26 LOC107987233 LINC00235 NHLRC4 SNRNP25 RAB40C WASIR2 TRAF7 BRICD5 POLR3K PDPK1 NARFL SNORD60 MIR940 ARHGDIG GFER LOC105371049 SNHG9 TMEM204 FAHD1 ECI1 HAGHL SNORA78 C16orf91 TSC2 HAGH MIR6767 TPSG1 FAM173A MIR6768 RAB11FIP3 LOC105371046 LUC7L SSTR5 HBZ MIR662 CASKIN1 LOC652276 PKD1 MSLN SLC9A3R2 MIR3677 E4F1 MIR5587 SNORA10 TPSD1 IGFALS RPUSD1 MLST8 AXIN1 FLJ42627 HBQ1 PRSS27 TPSAB1 WDR90 MPG ABCA17P WDR24 LOC105371047 RHBDL1 RPL23AP5 TSR3 MSRB1 NDUFB10 DDX11L10 MCRIP2 PTX4 LMF1 FAM234A ABCA3 CEMP1 TELO2 ATP6V0C
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PRR35 LOC100287175 METRN MIR3176 MIR5587 WFIKKN1 CHTF18 GNG13 CCDC78 RPUSD1 CAPN15 LOC107987233 LINC00235 NHLRC4 LOC105371184 LOC105371038 RAB40C WDR90 NARFL STUB1 PIGQ WDR24 HAGHL RHBDL1 PRR25 FAM173A MCRIP2 FBXL16 METTL26 JMJD8 RAB11FIP3 LOC101929280 MIR662 RHOT2 MSLN
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PRR35 LOC100287175 METRN MIR3176 MIR5587 WFIKKN1 CHTF18 GNG13 CCDC78 RPUSD1 CAPN15 LOC107987233 LINC00235 NHLRC4 LOC105371184 LOC105371038 RAB40C WDR90 NARFL STUB1 PIGQ WDR24 HAGHL RHBDL1 PRR25 FAM173A MCRIP2 FBXL16 METTL26 JMJD8 RAB11FIP3 LOC101929280 MIR662 RHOT2 MSLN
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PRR35 LOC100287175 METRN MIR3176 MIR5587 WFIKKN1 CHTF18 GNG13 CCDC78 RPUSD1 LMF1-AS1 CAPN15 LOC107987233 LINC00235 NHLRC4 LOC105371184 LOC105371038 RAB40C LOC107984876 WDR90 NARFL STUB1 PIGQ WDR24 HAGHL RHBDL1 SSTR5-AS1 PRR25 FAM173A MCRIP2 FBXL16 SOX8 METTL26 JMJD8 RAB11FIP3 SSTR5 LOC101929280 MIR662 LMF1 C1QTNF8 RHOT2 MSLN
nsv571030 Chr.16:766072 - 768092 on Build GRCh38 Gain MSLN
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC100287175 METRN WFIKKN1 CHTF18 GNG13 CCDC78 RPUSD1 LOC105371184 LOC105371038 RAB40C WDR90 NARFL STUB1 PIGQ WDR24 HAGHL RHBDL1 FAM173A MCRIP2 FBXL16 METTL26 JMJD8 LOC101929280 MIR662 RHOT2 MSLN
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PRR35 LOC100287175 METRN MIR3176 MIR5587 WFIKKN1 CHTF18 GNG13 CCDC78 RPUSD1 CAPN15 LOC107987233 LINC00235 NHLRC4 LOC105371184 LOC105371038 RAB40C WDR90 NARFL STUB1 PIGQ WDR24 HAGHL RHBDL1 PRR25 FAM173A MCRIP2 FBXL16 METTL26 JMJD8 RAB11FIP3 LOC101929280 MIR662 RHOT2 MSLN
esv27245 Chr.16:767355 - 768165 on Build GRCh38 Gain+Loss MSLN
nsv571034 Chr.16:767339 - 774098 on Build GRCh38 Gain MIR662 MSLN
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss WDR24 HAGHL LOC100287175 METRN RHBDL1 FAM173A MCRIP2 CHTF18 GNG13 CCDC78 RPUSD1 FBXL16 JMJD8 LOC105371184 LOC105371038 MIR662 WDR90 NARFL STUB1 RHOT2 MSLN
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MIR662 PRR25 MSLN CHTF18 GNG13 RPUSD1
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Additional Information:

For this assay, SNP(s) [rs72773454] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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